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opencobra
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memote
memote – the genome-scale metabolic model test suite
https://memote.readthedocs.io/
Apache License 2.0
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Cli tests
#616
ChristianLieven
closed
5 years ago
5
fix: add parametrized metric
#615
Midnighter
closed
5 years ago
1
refactor: add metrics to all test cases
#614
Midnighter
closed
5 years ago
1
docs: explain why C1 carriers are not considered for essential precursors
#613
ChristianLieven
closed
5 years ago
1
Mass balance not calculated, charge balance not calculated, annotations not detected
#612
matthiaskoenig
closed
5 years ago
7
fix: handle a case where demand reactions already exist in a given model
#611
ChristianLieven
closed
5 years ago
2
Double check the essential biomass precursors list for redundancies
#610
Midnighter
closed
5 years ago
0
fix: add packages needed by sphinx autodoc to rtd build environment
#609
ChristianLieven
closed
5 years ago
1
Fix Autodoc Generation
#608
ChristianLieven
closed
5 years ago
1
Fix external
#607
Midnighter
closed
5 years ago
3
Fix memote unit tests that were broken by new boundary behavior in cobrapy
#606
Midnighter
closed
5 years ago
0
Fix json output error reporting
#605
Midnighter
closed
5 years ago
1
Fix unique metabolites finding
#604
Midnighter
closed
5 years ago
1
Need better JSON serialization reporting when errors occur
#603
Midnighter
closed
5 years ago
0
Test for unique metabolites can produce wrong results if there are no expected compartment suffixes
#602
Midnighter
closed
5 years ago
0
fix: biomass SBO annotation test
#601
gregmedlock
closed
5 years ago
1
Test for biomass SBO term checks for presence rather than presence
#600
gregmedlock
closed
5 years ago
1
feat: add seed.reaction namespace for reaction annotations
#599
gregmedlock
closed
5 years ago
3
Errored when skipped
#598
ChristianLieven
closed
5 years ago
1
refactor: round to and display single a decimal place
#597
ChristianLieven
closed
5 years ago
2
As an author of the memote paper I want clear figures showing an overview of model performance in tests
#596
Midnighter
closed
5 years ago
0
Re-calculate memote results
#595
Midnighter
closed
5 years ago
0
Extend the duplicated reactions function to account for gene annotation
#594
Midnighter
opened
5 years ago
0
Change the experimental table layout
#593
Midnighter
opened
5 years ago
0
Refactor: gam_in_biomass should return the GAM value
#592
ChristianLieven
opened
5 years ago
0
Fix duplicate rxns
#591
ChristianLieven
closed
5 years ago
2
fix: remove redundant test case
#590
Midnighter
closed
5 years ago
2
Fix topology tests
#589
Midnighter
closed
5 years ago
1
Round to and display a single decimal place
#588
Midnighter
closed
5 years ago
0
switch order of list check to account for multiple SBO entries
#587
gregmedlock
closed
5 years ago
8
added 's' to end of 'kegg.gene' to be compliant with identifiers.org namespace
#586
gregmedlock
closed
5 years ago
1
fix: invert logic of test_fast_growth_default
#585
ChristianLieven
closed
5 years ago
2
Test sbml version
#584
ChristianLieven
closed
5 years ago
3
refactor: change behavior of `find_bounds`
#583
Midnighter
closed
5 years ago
1
refactor: use a model context for every test case
#582
Midnighter
closed
5 years ago
1
upgrade memote to be pytest 4.x compatible
#581
Midnighter
closed
5 years ago
2
feat: extend annotation tests with a check for inchi strings
#580
ChristianLieven
closed
5 years ago
1
Config reorg
#579
ChristianLieven
closed
5 years ago
3
Unpin pytest
#578
Midnighter
closed
5 years ago
0
chore: fix display of integers by using 'raw' type
#577
Midnighter
closed
5 years ago
2
Implementation Details
#576
ChristianLieven
closed
5 years ago
4
WIP: Fix differences
#575
Midnighter
closed
5 years ago
3
Fix disappearing
#574
ChristianLieven
closed
5 years ago
2
Fix disappearing
#573
ChristianLieven
closed
5 years ago
0
introduce a threshold for consistent test outcomes
#572
Midnighter
closed
5 years ago
1
Prettify the test descriptions with HTML tags
#571
ChristianLieven
opened
5 years ago
1
Improve consistency.detect_energy_generating_cycles
#570
ChristianLieven
opened
5 years ago
0
Include or improve error messages
#569
ChristianLieven
opened
5 years ago
1
Merge biomass.find_direct_metabolites with biomass.detect_false_positive_direct_metabolites
#568
ChristianLieven
opened
5 years ago
0
Use find_bounds to apply the maximal bounds given by the model!
#567
ChristianLieven
opened
5 years ago
0
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