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pachterlab
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kb_python
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
https://www.kallistobus.tools/
BSD 2-Clause "Simplified" License
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Print bug during kallisto part
#208
BenjaminDEMAILLE
closed
11 months ago
2
kb count error
#207
ScienceComputing
closed
12 months ago
2
Run Time
#206
BenjaminDEMAILLE
closed
12 months ago
3
unclear which genomic fasta to use
#205
yfarjoun
closed
1 year ago
2
requirements.txt says pandas>1.0.0 but breaks on pandas 2
#204
yfarjoun
closed
11 months ago
7
Issue trying to use batch file for fastq pairs that are already demultiplexed
#203
vweigman
closed
1 year ago
4
TCC matrix on 10x data
#202
gadepallivs
closed
1 year ago
11
Exon Quantification
#201
shashkat
closed
1 year ago
7
kb-python for isoform level analysis on bulk RNAseq
#200
harshini-c
closed
1 year ago
3
error when running kb count -tcc
#199
karthikj89
closed
1 year ago
3
Getting different counts when running the standard workflow vs the nucleus workflow
#198
krtitus
closed
1 year ago
4
kb ref prebuilt indices
#197
ryanz8
closed
1 year ago
2
Error in generating pseudobam in new dev version
#196
jkniehaus
closed
1 year ago
2
np.matrix is not supported when creating a report file for smartseq data
#195
yeroslaviz
closed
1 year ago
2
Can kb_python work with SMARTSeq v4 stranded library kit?
#194
yeroslaviz
closed
1 year ago
5
Aligning 10x 5' data with kb
#193
aizhimin
closed
1 year ago
1
Why is there a big difference between kallisto and cellranger count result?
#192
aizhimin
closed
1 year ago
8
Analysis report /metrics / QC for smart-seq3
#191
royfrancis
closed
1 year ago
2
[Labels: Question] Kallisto Bustools workflow to demultiplex pooled Single Cells
#190
AndreaMariani-AM
closed
1 year ago
1
output.s.c.bus has no BUS records
#189
royfrancis
closed
1 year ago
3
Raise ChemistryError after installation
#188
andrei-stoica26
closed
1 year ago
3
merge devel into master
#187
Lioscro
closed
1 year ago
1
deprecate python 3.6
#186
Lioscro
closed
1 year ago
2
command not found after pip3 installation
#185
tsofiya
closed
1 year ago
2
Added flags to create genomebam file with kallisto bus
#184
ricomnl
closed
1 year ago
4
Bump wheel from 0.34.2 to 0.38.1
#183
dependabot[bot]
closed
1 year ago
1
Unable to read kb count output loom file to Velocyto.R
#182
stanaka6
closed
1 year ago
4
kb count does not honor -m (i.e. memory option)
#181
molecules
closed
1 year ago
2
de novo `kb ref` and `kb ref -d` generate different index and t2g files
#180
sbwiecko
closed
1 year ago
4
kb info returns non-zero exit status
#179
yamanq
closed
1 year ago
2
Kb-python workflow differences (nucleus vs lamanno) resulting in different count numbers
#178
x1han
closed
1 year ago
1
kb count error
#177
mostafa-ti
closed
1 year ago
4
CVE-2007-4559 Patch
#176
TrellixVulnTeam
closed
1 year ago
0
kb count INDROPSV2 data, the result is not expected
#175
monoplasty
closed
1 year ago
1
Error: Number of files (9) does not match number of input files required by technology 10XV3 (2)
#174
monoplasty
closed
1 year ago
6
Counting overlapping genes
#173
jkniehaus
closed
1 year ago
2
issue with using demultiplexed files in SMARTSEQ2 mode
#172
franziskadenk
closed
1 year ago
4
Nucleus workflow output files lack spliced/unspliced counts layers
#171
AlinaKurjan
closed
2 years ago
4
Kb-python version differences (0.26.4 vs 0.27.2) resulting in different count numbers
#170
AlinaKurjan
closed
2 years ago
5
kb_python.config.UnsupportedOSError
#169
FionaMoon
closed
1 year ago
2
kb count ERROR for SMART-Seq2 data
#167
DamienTan
closed
2 years ago
25
Installation Error
#166
FionaMoon
closed
2 years ago
5
Added 10xv3_Ultima tech
#165
sbooeshaghi
closed
2 years ago
0
How to get isoform specific UMI count matrix
#164
lzx325
closed
2 years ago
8
kb_python.validate.ValidateError: ABCDE/merged.bus has no BUS records
#163
stupidstupidstupidstupid
closed
2 years ago
3
merge devel into master
#162
Lioscro
closed
1 year ago
1
upgrade ngs_tools to 1.5.14 for BDWTA whitelist
#161
Lioscro
closed
2 years ago
1
`--gene-names` results in an anndata object where the vars are ENSEMBL IDs
#160
Lioscro
closed
2 years ago
4
merge devel into master
#159
Lioscro
closed
2 years ago
1
UMI counts of spliced and unspliced don't match with counts in Cell Ranger output.
#158
akhst7
closed
2 years ago
0
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