issues
search
pangenome
/
pggb
the pangenome graph builder
https://doi.org/10.1101/2023.04.05.535718
MIT License
346
stars
37
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
fix -n/-c in partition-before-pggb
#352
AndreaGuarracino
closed
8 months ago
0
A bit stronger filtering for mappings and matches
#351
AndreaGuarracino
closed
8 months ago
0
update wfmash
#350
AndreaGuarracino
closed
8 months ago
0
Fixes in `partition-before-pggb`
#349
AndreaGuarracino
closed
8 months ago
0
`Mandatory -o/--output-dir`, remove `--no-pansn` and better errors reporting
#348
AndreaGuarracino
closed
9 months ago
0
update odgi/smoothxg
#347
AndreaGuarracino
closed
9 months ago
0
Minimize the minimal `pggb` command line
#346
AndreaGuarracino
closed
9 months ago
1
Command terminated by signal 8
#345
clemgoub
opened
9 months ago
2
vg deconstruct error
#344
arslan9732
closed
9 months ago
5
update multiqc and vg
#343
AndreaGuarracino
closed
9 months ago
0
--n-haplotypes option not recognized
#342
arunisaac
closed
9 months ago
2
fix parameter parsing
#341
AndreaGuarracino
closed
9 months ago
0
Fix libwfa2cpp in the Docker image
#340
AndreaGuarracino
closed
9 months ago
0
[docker] wfmash: error while loading shared libraries: libwfa2cpp.so.0
#339
clemgoub
closed
9 months ago
1
update gffafix
#338
AndreaGuarracino
closed
9 months ago
0
the parameters to build pangenome for metagenomes
#337
Wenhai-Zhang
opened
9 months ago
2
update parameters and error messages
#336
AndreaGuarracino
closed
9 months ago
0
Update documentation and GitHub workflows
#335
AndreaGuarracino
closed
10 months ago
0
How to understand the vcf file output by PGGB?
#334
Lucio-Yang
opened
10 months ago
3
Update `wfmash` with the new `MashMap3`
#333
AndreaGuarracino
closed
10 months ago
0
update `partition-before-pggb`
#332
AndreaGuarracino
closed
10 months ago
0
Construct PanGenome
#331
Tonitsk8264
closed
9 months ago
7
update smoothxg and odgi
#330
AndreaGuarracino
closed
10 months ago
0
How to handle when two contigs from the same assembly sligtly overlap
#329
Isoris
opened
10 months ago
7
'SN:Z' and 'SO:i' tags for segments/nodes
#328
songbowang125
opened
10 months ago
1
fix partition-before-pggb -p bug
#327
subwaystation
closed
11 months ago
0
update MultiQC to v1.15
#326
subwaystation
closed
11 months ago
0
update `gfaffix`
#325
AndreaGuarracino
closed
11 months ago
0
update `vg deconstruct` to version 1.50.1
#324
AndreaGuarracino
closed
11 months ago
1
add entire `scripts` folder in `bin`
#323
AndreaGuarracino
closed
11 months ago
0
Path to paf2net.py not correct in latest Docker build
#322
brettChapman
closed
11 months ago
2
check PanSN in the input FASTA
#321
AndreaGuarracino
closed
11 months ago
0
Wrong setting of POA, but it still finish without error
#320
baozg
closed
11 months ago
4
Use of pggb to generate alignments for phylogenomics
#319
sivico26
opened
1 year ago
2
handle version reporting if pggb is symlinked
#318
ASLeonard
closed
1 year ago
1
make stats option consistent with help
#317
mbhall88
closed
1 year ago
1
Even if the genome is small, shouldn't too many samples be added to build the graph
#316
Wwwwwwwyc
opened
1 year ago
8
Heuristic `wfmash`
#315
AndreaGuarracino
closed
1 year ago
0
Problems with skipping the wfmash step
#314
Lucio-Yang
closed
1 year ago
8
Construct pangenome
#313
Daishoulu
opened
1 year ago
3
vcfwave not found
#312
aijigekoukou-shen
opened
1 year ago
2
Update `vcflib` to get the fixed `vcfwave`
#311
AndreaGuarracino
closed
1 year ago
0
Converting to a single connected component
#310
JoshuaDanielRubin
opened
1 year ago
2
Producing subgraphs of large pangenomes
#309
ASLeonard
closed
1 year ago
2
Problem with the ODGI 1D visualization by path orientation
#308
KopalliV
opened
1 year ago
6
Joining the Chromosome Alignments?
#307
zskey-zn
closed
1 year ago
2
Building a better pangenome
#306
GeorgeBGM
opened
1 year ago
25
bioconda is still broken
#305
AndreaGuarracino
closed
1 year ago
0
update smoothxg to avoid uncovered edges
#304
AndreaGuarracino
closed
1 year ago
0
update `smoothxg` with a working `odgi`
#303
AndreaGuarracino
closed
1 year ago
0
Previous
Next