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phbradley
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conga
Clonotype Neighbor Graph Analysis
MIT License
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Where is the ‘Notes’ in ipynb?
#71
winglet0996
closed
2 months ago
1
Question re: GEX cluster assignments
#70
yls2g13
closed
3 months ago
3
using CONGA on multiplexed data?
#69
jjs847
opened
3 months ago
0
deal with TRDV1_TRAJ_TRAC sequences
#68
guillemsanchezsanchez1996
opened
5 months ago
0
Only CDR3 Region?
#67
TheRaspberryFox
opened
5 months ago
1
Question about the `_compute_graph_overlap_stats()` function
#66
xiachenrui
opened
6 months ago
0
Update fixup_gene_name() to select the lowest expect allele, rather than just *01 when no allele provided.
#65
bbimber
closed
7 months ago
5
Question about --nbr_fracs
#64
anchormok
opened
11 months ago
5
Support environment variable for preferred SVG to PNG utility
#63
bbimber
closed
12 months ago
4
Issue with logo plots
#62
guillemsanchezsanchez1996
opened
1 year ago
1
running Conga on integrated Seurat Gex
#61
SamWell16
opened
1 year ago
1
pMHC data processing
#60
leeanapeters
opened
1 year ago
1
make dev
#59
sschattgen
closed
1 year ago
0
Mouse BCR
#58
DennisCambridge
opened
1 year ago
5
calc_nbrs reworked for greater flexibility
#57
sschattgen
closed
1 year ago
1
What does spurious chain sharing mean?
#56
chuckzzzz
opened
1 year ago
10
what is mean of num_cells_w_tcr: 19055
#55
mabaoweireadingene
closed
1 year ago
1
Just make Logo plots starting from TCR data
#54
erosix
opened
1 year ago
5
ImportError: cannot import name 'PathLike'
#53
zhao-xinlu
opened
1 year ago
1
Error in Aggregate the individual GEX runs into a single AnnData object
#52
QianhuiXu
opened
1 year ago
2
run_conga.py error = UnicodeEncodeError: 'ascii' codec can't encode character '\xd7' in position 26: ordinal not in range(128)
#51
shimbrianh
opened
1 year ago
0
what is mean of ‘raw_count’ in tcr_clumping?
#50
mabaoweireadingene
opened
2 years ago
0
AssertionError in conga.plotting.make_graph_vs_graph_logos()
#49
cr2106
opened
2 years ago
1
Plot epitope specificity on GEX umap
#48
cr2106
opened
2 years ago
1
Empty clones_file
#47
kkearns13
closed
2 years ago
9
Merging Multiple TCR Files
#46
kkearns13
closed
2 years ago
3
update mouse tcr gene reference
#45
sschattgen
opened
2 years ago
2
Where iMHC scores are stored in the data model?
#44
markgene
opened
2 years ago
2
Error writing adata to file
#43
kjkrishnan
closed
2 years ago
5
Merging with Batch Keys
#42
SandwichFiend
closed
2 years ago
1
make_tcr_clumping_plot failing when trying to save figure
#41
AvivBenchorin
opened
2 years ago
4
merge_samples errors
#40
AlicePsyche
closed
2 years ago
6
subfigures (axes, gene symbols, features) cut off
#39
ViHammer
closed
2 years ago
2
Writing out all_nbrs dictionary for reruns.
#38
sschattgen
closed
2 years ago
1
speed up graph-vs-feature analysis on large datasets
#37
sschattgen
opened
2 years ago
0
Save plots as svg
#36
cr2106
closed
2 years ago
1
TCR/BCR logos misaligned
#35
JingwenD
closed
2 years ago
6
Compare multiple sample groups
#34
cr2106
opened
2 years ago
7
failed in merge_samples.py
#33
JingwenD
closed
2 years ago
7
Question: plotting batch info when running vai run_conga.py script
#32
s2hui
opened
2 years ago
1
weird GEX and TCR UMAPs
#31
coro1c
closed
2 years ago
11
Question: num cells
#30
s2hui
closed
2 years ago
5
conga.tcrdist.make_10x_clones_file.make_10x_clones_file
#29
afilaliM781
closed
2 years ago
1
Question about using previously integrated gex data
#28
s2hui
closed
2 years ago
7
Just iMHC Scoring Method
#27
kanefos
closed
2 years ago
2
Question: barcodes for cells
#26
s2hui
closed
2 years ago
4
Question: Is it possible to run with BCR sequences
#25
ghost
opened
2 years ago
3
AttributeError: Can only use .str accessor with string values!
#24
s2hui
closed
2 years ago
2
KeyError: 'graph_vs_graph_logos'
#23
chris-rands
closed
2 years ago
7
Can CoNGA handle multiple samples?
#22
lormmy
closed
2 years ago
3
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