phyloref jphyloref issues

phyloref / jphyloref

MIT License

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Quick fix for the context download issue

#107 gaurav opened 6 months ago
2
Upgrade dependencies and fix GitHub download issue

#106 gaurav opened 6 months ago
0
Replace NanoHTTPD with another lightweight HTTP server

#105 gaurav opened 7 months ago
0
Bump json from 20180130 to 20230227

#104 dependabot[bot] opened 1 year ago
0
Bump spotless-maven-plugin from 1.15.0 to 1.20.0

#103 dependabot[bot] opened 1 year ago
0
Add JOSS URL to README

#102 gaurav closed 2 years ago
1
Release of JPhyloRef v1.1.1

#101 gaurav closed 3 years ago
2
Fixes minor errors resulting from previous edits

#100 hlapp closed 3 years ago
0
Minor fixes to paper/paper.md

#99 jcoliver closed 3 years ago
0
Updated Cellinese 2021 citation to "accepted"

#98 gaurav closed 3 years ago
6
JPhyloRef v1.1.0 release

#97 gaurav closed 3 years ago
0
Introduces Statement of Need section

#96 hlapp closed 3 years ago
2
Remove "phylogenetic" when referring to clade definitions

#95 gaurav closed 3 years ago
0
Updated README to add `-SNAPSHOT` to the filename and to make the version number clearer

#94 gaurav closed 3 years ago
0
Consider use of term "clade" vs. "phylogenetic clade"

#93 jcoliver closed 3 years ago
1
Update README execution example

#92 jcoliver closed 3 years ago
0
Rearrange paper as per reviewer comment

#91 gaurav closed 3 years ago
6
Fix IntelliJ settings

#90 gaurav opened 3 years ago
0
Improve documentation

#89 gaurav closed 3 years ago
0
Documentation: Example usage

#88 iimog closed 3 years ago
0
Documentation: statement of need

#87 iimog closed 3 years ago
0
Fix XML/Markdown/JSON formatting

#86 gaurav closed 3 years ago
0
Remove JFact as a supported reasoner

#85 gaurav closed 3 years ago
1
Improvements made in response to JOSS reviewer suggestions

#84 gaurav closed 3 years ago
0
Illegal reflective access in com.google.inject.internal.cglib.core.$ReflectUtils$2

#83 iimog closed 3 years ago
2
Lots of WARNINGs when building jphyloref

#82 iimog closed 3 years ago
2
Need to set JAVA_HOME to build jphyloref

#81 iimog closed 3 years ago
2
Clarify readme

#80 gaurav closed 3 years ago
0
Added JOSS paper to submit

#79 gaurav closed 3 years ago
0
Removed FaCT++ JNI as a built-in reasoner

#78 gaurav closed 3 years ago
0
JPhyloRef v1.0.0

#77 gaurav closed 3 years ago
0
Add build/execute instructions and Maven Central badge to README

#76 gaurav closed 3 years ago
0
Add javadoc.io badge

#75 gaurav closed 3 years ago
2
Remove requirement for referencing `phyloref:Phyloreference` from ontology to be reasoned over

#74 gaurav opened 3 years ago
0
JPhyloRef v0.4.0

#73 gaurav closed 3 years ago
1
Switch to Github Actions

#72 gaurav closed 3 years ago
3
Skip phyloreferences without expected resolution during testing

#71 gaurav closed 3 years ago
0
Add the explicit import for OWL API

#70 gaurav closed 3 years ago
1
Write up manuscript to submit to JOSS

#69 gaurav closed 3 years ago
2
Release v0.3.1

#68 gaurav closed 4 years ago
1
Fix bug in return value

#67 gaurav closed 4 years ago
0
Release v0.3 of JPhyloRef

#66 gaurav closed 4 years ago
2
Add the filename to the testing output

#65 gaurav closed 4 years ago
0
Add support for transparently compressing ontologies using NanoHTTP

#64 gaurav opened 4 years ago
0
Added support for receiving JSON-LD files compressed with Gzip

#63 gaurav closed 4 years ago
1
Make WebserverCommand work on macOS

#62 gaurav closed 4 years ago
0
Test whether a phyloref resolves to multiple nodes on a single phylogeny

#61 gaurav opened 5 years ago
0
Use model 2.0 expected resolution information

#60 gaurav closed 3 years ago
1
Document how we execute JPhyloRef on our backend server

#59 gaurav closed 5 years ago
1
Update TestCommand to use Model 2.0 expectations

#58 gaurav closed 3 years ago
0