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pinellolab
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CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
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ERROR: NUMPY RELATED
#437
ZhongxuanZhang
opened
4 months ago
1
CRISPRessoAgregate
#435
xguo-nveloptx
opened
4 months ago
1
Prefix the release Docker tag with a `v`
#434
Colelyman
closed
4 months ago
0
ERROR: Offset around cut would be greater than reference sequence length.
#433
albustruong
opened
4 months ago
2
Showing sgRNA sequences on hover in CRISPRessoPro
#432
Colelyman
closed
4 months ago
0
Fix plots and improve plot error handling
#431
Colelyman
closed
4 months ago
0
Fix issues with `file_prefix`
#430
Colelyman
closed
5 months ago
0
Fix batch mode pandas warning. (#70)
#429
Colelyman
closed
5 months ago
0
Bump version to 2.3.1 and change default CRISPRessoPooled behavior to change in 2.3.2
#428
Colelyman
closed
5 months ago
0
Fix status file name
#427
Colelyman
closed
5 months ago
0
Confused about sequence directions in prime editing parameters
#426
francoiskroll
closed
2 months ago
6
Extract `jinja_partials` and fix CRISPRessoPooled fastp errors
#425
Colelyman
closed
5 months ago
0
Update README
#424
Colelyman
closed
5 months ago
0
Fix CRISPRessoPooled error reporting
#423
kclem
closed
5 months ago
0
Remove extra imports from CRISPRessoCore
#422
Colelyman
closed
5 months ago
0
Cole/refactor jinja undefined (#66)
#421
Colelyman
closed
5 months ago
0
Allele plot doesn't show base letter
#420
albustruong
closed
5 months ago
2
Updated README
#419
trevormartinj7
closed
5 months ago
0
Fix Jinja2 undefined variables
#417
Colelyman
closed
5 months ago
0
How to solve Error 0?
#416
ShawnYuXX
closed
5 months ago
4
Fastp, args as data, guardrails, and PE fix
#415
Colelyman
closed
6 months ago
0
Fix args in manifest
#414
Colelyman
closed
6 months ago
0
Round guardrails
#413
Snicker7
closed
6 months ago
0
Round guardrails
#412
Snicker7
closed
6 months ago
0
CRIPSResso2 package not included in channel
#411
AnnMue
closed
5 months ago
1
Fix plotly import
#410
Snicker7
closed
6 months ago
0
Fix plotly import
#409
Snicker7
closed
6 months ago
0
Args As Data
#408
trevormartinj7
closed
6 months ago
0
INDELs not recognized in the allele frequency table
#406
yifanzhou123
closed
6 months ago
2
Alleles frequency table plot not generated
#405
JNWorkman
closed
5 months ago
3
Decrease Docker image size and fix PE naming and parameter behavior
#404
Colelyman
closed
6 months ago
0
Fix the assignment of multiple quantification window coordinates
#403
Colelyman
closed
6 months ago
0
Base "N" in allele frequency quilts plot
#402
xguo-nveloptx
closed
6 months ago
2
custom plot script
#401
xguo-nveloptx
closed
6 months ago
3
fix `space` character in README
#400
DennyDai
closed
6 months ago
0
Pr on open
#399
Snicker7
closed
6 months ago
0
GitHub actions on PR
#398
Snicker7
closed
6 months ago
0
Move read filtering to after merging in CRISPResso
#397
Colelyman
closed
6 months ago
1
Errors thrown when giving amplicon_seq in lower case.
#396
francoiskroll
closed
6 months ago
0
Run integration tests on every push
#394
Colelyman
closed
6 months ago
0
Fix #367, reads only align to prime edited amplicon, not to reference
#393
Colelyman
closed
6 months ago
0
Fix interleaved fastq input in CRISPRessoPooled and suppress CRISPRessoWGS params
#392
Colelyman
closed
6 months ago
0
Compare ordering
#391
Snicker7
closed
6 months ago
0
Why doesn't fig9 show base sequences
#390
lewislearning
closed
6 months ago
2
Remove future Pandas warnings and sort CRISPRessoCompare tables
#389
Colelyman
closed
6 months ago
1
Install a previous version of CRISPResso 2.2.4
#388
Yingjie848
closed
6 months ago
1
CRISPResso2 cannot handle drop out deletions between two target sites, apparently
#387
GreenSeaBug
opened
6 months ago
1
Run unit tests via Github Actions and fix matplotlib character issue
#386
Colelyman
closed
7 months ago
0
Annotations for alleles not appearing in allele frequency quilt plots
#384
JNWorkman
closed
7 months ago
5
Alignment issues
#383
jsromanowski
closed
7 months ago
5
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