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pritykinlab
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guidescanpy
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added macos (m1) runner
#82
vineetbansal
opened
1 month ago
0
alt_pam = None for cpf1 enzyme
#81
vineetbansal
closed
2 months ago
0
Vb/sqlite path
#80
vineetbansal
closed
2 months ago
0
snakemake workflow can generate generally usable database
#79
vineetbansal
closed
2 months ago
0
Vb/sqlalchemy
#78
vineetbansal
closed
2 months ago
0
No need for the "web" extra
#77
vineetbansal
opened
1 year ago
0
Display guidescan executable version in footer
#76
vineetbansal
opened
1 year ago
0
Sequence Search for different mismatches
#75
vineetbansal
closed
1 year ago
1
Moved detailed documentation to wiki pages
#74
1rzhu
closed
1 year ago
1
Documentation
#73
1rzhu
closed
1 year ago
0
Added all organisms to snakemake config file
#72
1rzhu
closed
1 year ago
1
Sequence Pattern Filter
#71
1rzhu
closed
1 year ago
11
Vb/snakemake pytest
#70
vineetbansal
closed
1 year ago
0
bug fix in filter_tag; multiprocessed add_ce step
#69
vineetbansal
closed
1 year ago
0
Database 0/1-Index Correction
#68
1rzhu
opened
1 year ago
0
guidescanpy filter_tag command; minor other tweaks
#67
vineetbansal
closed
1 year ago
1
cpf1 sequence correction
#66
1rzhu
closed
1 year ago
1
Added NAG as alt_pam in guidescan_enumerate
#65
1rzhu
closed
1 year ago
1
Removed print statements for constraint violations
#64
vineetbansal
closed
1 year ago
0
Data checking
#63
1rzhu
closed
1 year ago
2
support for chromAlias format
#62
vineetbansal
closed
1 year ago
1
Matplotlib Backend with MacOS
#61
1rzhu
closed
1 year ago
3
Simplified decision on add-tag output file format.
#60
1rzhu
closed
1 year ago
0
Alternative format for chr_acc
#59
1rzhu
closed
1 year ago
3
CE Calculation
#58
vineetbansal
closed
1 year ago
0
Refactoring
#57
vineetbansal
closed
1 year ago
2
PAM for cpf1 must match at start, not end
#56
vineetbansal
closed
1 year ago
0
Vb/snakemake docker
#55
vineetbansal
closed
1 year ago
0
Match Snakemake output with Flask config.
#54
1rzhu
closed
1 year ago
0
Set the upper bound for GC-content
#53
1rzhu
closed
1 year ago
0
postgres on localhost wrt runner
#52
vineetbansal
closed
1 year ago
0
Alternative formats for chr2acc files
#51
vineetbansal
closed
1 year ago
0
Added urls for raw data files
#50
vineetbansal
closed
1 year ago
0
tweaks to invoke conda env from a yaml
#49
vineetbansal
closed
1 year ago
0
Get snakemake ready to use
#48
1rzhu
closed
1 year ago
1
Off-target info download (issue #1)
#47
1rzhu
closed
1 year ago
1
Add @job_result decorator wherever applicable
#46
vineetbansal
opened
1 year ago
0
pulling latest DDL from live db
#45
vineetbansal
closed
1 year ago
0
Added GC-Content filter.
#44
1rzhu
closed
1 year ago
1
snakemake workflow WIP
#43
vineetbansal
closed
1 year ago
1
Paginated ajax call in job_query
#42
1rzhu
closed
1 year ago
3
impose max size limit on parsed genomic regions
#41
vineetbansal
closed
1 year ago
1
Create a snakemake workflow for adding new organisms across the web app
#40
vineetbansal
closed
1 year ago
3
Investigate FastAPI as an alternative to Flask
#39
vineetbansal
closed
1 year ago
1
Filter gRNAs by "complexity"
#38
vineetbansal
closed
1 year ago
3
Filter gRNAs by GC content
#37
vineetbansal
closed
1 year ago
1
support for region/orderby/asc/start/limit query params for job_query result endpoint
#34
vineetbansal
closed
1 year ago
1
Fixed issue #3.
#33
1rzhu
closed
1 year ago
0
Fixed Issue #28 Remove legacy_ordering argument
#32
1rzhu
closed
1 year ago
0
Add a `generate_kmers` command
#31
vineetbansal
closed
1 year ago
1
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