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r3fang
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SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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namespace ‘rlang’ 0.4.6 is already loaded, but >= 0.4.7 is required
#210
brianpenghe
closed
3 years ago
1
sorry I opened this by mistake
#209
shokohirosue
closed
3 years ago
0
Error in generating a Snap file from a Bed file - IndexError: list index out of range
#208
joepelt
opened
3 years ago
1
declare plot3D import
#207
ttriche
opened
3 years ago
0
Getting "is not snap file" error when they are snap files
#206
myylee
closed
3 years ago
1
Error in addBmatToSnap.default
#205
afcmalone
opened
3 years ago
0
is pysam supported in windows?
#204
achieng33
opened
3 years ago
0
Eigenvector plot structure
#203
mej54
opened
3 years ago
0
runHomer error
#202
afcmalone
opened
3 years ago
4
Version of python
#201
ldorozco
opened
3 years ago
0
potential bug with adding pmat via snaptools snap.py getFragFromBarcode
#200
danielgchen
opened
3 years ago
0
creating gencode bed file for grch38 for gmat
#199
danielgchen
opened
3 years ago
0
[E::idx_find_and_load] Could not retrieve index file
#198
EsperanzaDai
opened
3 years ago
5
runHomer de novo
#197
wangmhan
opened
4 years ago
0
runDiffusionMaps function returns error status code 502
#196
anthonyxie
opened
4 years ago
0
Running Error With Integrative Analysis of 10X and snATAC
#195
tzhu-bio
opened
4 years ago
3
Bug in snapToSeurat()
#194
skilpinen
opened
4 years ago
0
cluster annotation
#193
tzhu-bio
closed
3 years ago
0
how to get the DE peaks from combined object
#192
songeric1107
opened
4 years ago
0
snapATAC multiple sample integration
#191
afcmalone
opened
4 years ago
0
What is the principle of cluster annotation?
#190
tzhu-bio
closed
4 years ago
0
404 Not found error for PBMC 5K 10K FASTQ files
#189
mudappathir
opened
4 years ago
0
Seurat and R version
#188
mudappathir
closed
4 years ago
1
What the meaning of blacklist?
#187
tzhu-bio
opened
4 years ago
2
Error in addBmatToSnap.default
#186
chemistmarsy
closed
4 years ago
1
how to add custome genome
#185
wangmhan
opened
4 years ago
5
How the sequencing-depth normalization works when construct Jaccard index matrix
#184
wangmeijiao
opened
4 years ago
0
Error running rGREAT
#183
ccruizm
opened
4 years ago
0
runHomer
#182
Brawni
opened
4 years ago
5
Loading species mixed data
#181
jindalk
opened
4 years ago
0
problem running snaptools
#180
ninal88
closed
4 years ago
2
error: cell-by-peak matrix
#179
Qingrun
opened
4 years ago
0
Error in snaptools snap-pre
#178
tlsteph
opened
4 years ago
2
"error: the following nsap files do not contain AM session"
#177
rojinsafavi
closed
4 years ago
0
finding DARs for a group of clusters versus all others
#176
cschmidl
opened
4 years ago
0
Dumping bam file for specific cluster
#175
cschmidl
opened
4 years ago
0
usable barcode
#174
rojinsafavi
closed
4 years ago
0
combining datasets
#173
rojinsafavi
closed
4 years ago
0
Inset Size
#172
TheSallyGardens
opened
4 years ago
0
convert seurat object to snap object
#171
rojinsafavi
closed
4 years ago
1
Questions about Step10 and 14 (or merging similar clusters)
#170
yxiao832
opened
4 years ago
0
Quick question on Step12 to step13
#169
JihedC
opened
4 years ago
1
Question about Cell line analysis
#168
Qingrun
opened
4 years ago
1
Empty Rows Error in runDiffusionMaps
#167
spietrzak
opened
4 years ago
2
Error in Integrative Analysis of 10X and snATAC Step 3
#166
yjchen1201
opened
4 years ago
0
installation error
#165
xuebaliang
opened
4 years ago
4
Xlim
#164
mardzix
closed
4 years ago
0
Trouble loading pmat with snapATAC
#163
suminwei2772
opened
4 years ago
0
runDiffusionMaps gives variable results
#162
BKLi
opened
4 years ago
2
runMACS on filtered regions
#161
dinhdiep
opened
4 years ago
0
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