issues
search
r3fang
/
SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
296
stars
124
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Normalization causing degenerate dimensionality reduction
#160
suragnair
opened
4 years ago
0
makeBinary error: vector memory exhausted
#159
spietrzak
opened
4 years ago
0
multiple samples analysis: how to merge barcode files?
#158
billzt
opened
4 years ago
2
RunDiffusionMaps fails with pmat
#157
suragnair
opened
4 years ago
10
Error running snap-add-pmat
#156
drbecavin
closed
4 years ago
2
how to check if snap file is complete
#155
hjack123
opened
4 years ago
1
Error using snap-add-pmat
#154
rhodesch
closed
4 years ago
8
narrowPeak file headers missing
#153
dskhanirfan
opened
4 years ago
0
Wrong parameters for MACS2
#152
suragnair
opened
4 years ago
3
createPmat for snapATAC V1.0.0?
#151
linwang6
opened
4 years ago
0
installation error
#150
hejing3283
opened
4 years ago
0
runMagic step size hard-coded here, but also taken as input
#149
suragnair
opened
4 years ago
1
subset of snap object
#148
BingbingYuan
opened
4 years ago
1
Error running showBinSizes
#147
spietrzak
opened
4 years ago
0
Potential predictGenePeakPair bug
#146
dbetel
opened
4 years ago
0
ARPACK solver failed to converge in runDiffusionMaps
#145
wshands
closed
4 years ago
0
Error in `createSnap`
#144
galib36
opened
4 years ago
4
gmat
#143
hjack123
opened
4 years ago
4
error addPmatToSnap(x.sp)
#142
hjack123
opened
4 years ago
4
Find DARs between different samples
#141
esh81
opened
4 years ago
1
Bam remove duplicate
#140
TheSallyGardens
closed
4 years ago
4
How to perform Barcode selection if don't have a 10X CSV file?
#139
dioncst
opened
4 years ago
10
gene-enhancer pairs visualization tool
#138
qingnanl
opened
4 years ago
1
Peak normalization
#137
qingnanl
opened
4 years ago
2
Error in runJDA "could not find function "runJDA""
#136
cynzajac
opened
4 years ago
4
No DARs identified?
#135
yeswzc
opened
4 years ago
5
Convert BAM files (Cell ranger) to SNAP files
#134
AitorAndueza
closed
4 years ago
5
How to generate bigwig file of defined subset of nuclei?
#133
wulabupenn
opened
4 years ago
1
about Integrative analysis of scATAC-seq and scRNA-seq
#132
ahmedabbas81
opened
4 years ago
1
addBmatToSnap bins does not match
#131
manalb95
opened
4 years ago
3
Hi, i have a question about using "Integrative Analysis of PBMC scATAC-seq and scRNA-seq"
#130
kkjjhhk
opened
4 years ago
1
seqnames in peaks / homer analysis
#129
mej54
opened
4 years ago
10
Error adding Pmat to SnapATAC object
#128
emdann
opened
4 years ago
3
runMACS ERROR
#127
mchill2
closed
4 years ago
1
Loading peak matrix to x.sp in different batches
#126
Zhen-Miao
closed
4 years ago
1
Problem in runJaccard in SnapATAC
#125
Sububioinfo
opened
4 years ago
1
"createGmatFromMat" Error:.M.kind(x) : not yet implemented for matrix with typeof NULL
#124
aina91
opened
4 years ago
3
diffusion maps "problem too large"
#123
talashuach
opened
4 years ago
3
Colors of plots
#122
kallaway14
closed
4 years ago
4
error in createSnap
#121
JingxinGuo
opened
4 years ago
1
gencode.v19.annotation.gene.bed file is not acessible anymore
#120
CSBioAzim
closed
4 years ago
1
issue with runMACS
#119
ulitzenburger
opened
4 years ago
0
PBMC 10K & 5K findDAR issue
#118
ScienceBear
opened
4 years ago
0
normalization
#117
ghost
opened
4 years ago
4
plotFeatureSingle quantile error: missing value
#116
yeswzc
closed
4 years ago
2
runDiffusionMaps error with low cell number
#115
galib36
closed
4 years ago
1
rhdf5 not working with .snap files
#114
mathosi
closed
4 years ago
2
Error in runJaccard.default
#113
mvinyard
opened
4 years ago
1
Installation getting hung up on 'matrix' version
#112
mvinyard
closed
4 years ago
1
Step: Remove unwanted chromosomes, not work?
#111
linwang6
closed
4 years ago
2
Previous
Next