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r3fang
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SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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problems with runMACS
#110
kchowdhary4
closed
4 years ago
15
Skip marker annotation step?
#109
yeswzc
closed
4 years ago
5
no applicable method for 'runChromVAR' applied to an object of class "snap"
#108
hjack123
opened
4 years ago
15
FindTransferAnchors
#107
hjack123
opened
4 years ago
7
custom genome
#106
BingbingYuan
closed
4 years ago
1
runMagic segfault error
#105
RZiffra
closed
4 years ago
3
co-embedding scRNAseq
#104
hjack123
opened
4 years ago
1
barcode files
#103
mej54
closed
4 years ago
5
duplicate barcode
#102
hjack123
closed
4 years ago
3
"error: the following snap files do not contain PM session"
#101
hjack123
closed
4 years ago
4
snap@gmat has multiple columns for 1 gene
#100
hjack123
closed
4 years ago
1
findDAR is giving NA error
#99
galib36
opened
4 years ago
3
Minor/Warning issue: 'rBind' is deprecated
#98
hypercompetent
opened
4 years ago
2
Pull out feature topic probability matrix
#97
StatsAreForLosers
opened
4 years ago
1
HDF5 read fails
#96
dawe
opened
4 years ago
1
Step 11 snaptools unrecognized argument
#95
smoot-samuel
opened
4 years ago
5
I was trying update the package because of the missing runDiffusionMaps function, but ran into this error?
#94
hjack123
closed
4 years ago
1
guideline for barcode selection
#93
hjack123
opened
4 years ago
17
snap has no AM session
#92
hjack123
closed
4 years ago
4
dex-fastq permission error
#91
mvinyard
closed
4 years ago
5
how can I analyze multiple samples without any barcode ?
#90
Ruismart
closed
4 years ago
7
Unable to run addBmatToSnap - aborts R session
#89
ccruizm
closed
4 years ago
10
kernel
#88
ccruizm
closed
4 years ago
0
runVIZ for 3D plotting
#87
yasserIRCM
closed
4 years ago
3
Installing SnapATAC after recent updates
#86
RZiffra
closed
4 years ago
3
could not find function "runDiffusionMaps"
#85
luzgaral
closed
4 years ago
2
--barcode-file option from snaptools snap-pre doesnt seem to work
#84
opoirion
closed
4 years ago
1
Bug report in runDiffusionMaps
#83
abayegan
closed
4 years ago
8
Error in creating bmat
#82
znavidi
closed
4 years ago
4
Max number of single cells to create beat
#81
znavidi
opened
5 years ago
8
.thanks...
#80
hjack123
closed
4 years ago
1
STEP 9. ERROR input matrix of obj1 and obj2 do not match
#79
yasserIRCM
closed
4 years ago
3
Error in CreateSnap
#78
yasserIRCM
closed
5 years ago
2
Error when running JDA dimensionality step
#77
danielgchen
closed
4 years ago
24
Filtering snap object directly by barcode
#76
vkartha
closed
5 years ago
0
Gencode.vM16.gene.bed 404 not found
#75
ScienceBear
closed
5 years ago
2
differential peaks by cluster
#74
ellenhong1
closed
5 years ago
7
creating snap file from fragments.tsv for10X mixture of mouse and human
#73
znavidi
opened
5 years ago
4
What is the difference between Total Fragments and UMI?
#72
emrecaglayan
opened
5 years ago
1
Detailed explanation of snaptools preprocessing parameters
#71
emrecaglayan
opened
5 years ago
1
snaptools: command not found
#70
ScienceBear
closed
5 years ago
1
inconsistency between raw and binary bmat matrix
#69
znavidi
closed
4 years ago
7
create snap file for human and mouse samples
#68
znavidi
closed
5 years ago
4
Downloading SnapATAC
#67
smoot-samuel
closed
5 years ago
2
snap-pre step error
#66
znavidi
opened
5 years ago
4
Object x.lsa.lda.sp
#65
IMJoeyZhu
closed
4 years ago
2
snaptools alignment error
#64
cuperusj
closed
4 years ago
24
snaptools snap-pre
#63
ghost
opened
5 years ago
2
A bug in runClusters.R
#62
xuzhougeng
opened
5 years ago
1
adding more metadata to samples
#61
cschmidl
opened
5 years ago
0
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