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radical-cybertools
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radical.repex.at
This is the github location for RepEx developed by the RADICAL team in conjunction with the York Lab.
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T-REMD use-case fails on comet
#38
antonst
opened
8 years ago
8
repex fail to start
#37
haoyuanchen
closed
8 years ago
2
T dimension issue in TUU
#36
haoyuanchen
closed
8 years ago
3
TUU usecase 1728 replicas run fails on Stampede
#35
antonst
closed
8 years ago
2
not all CUs in MD step finished concurrently
#34
haoyuanchen
opened
9 years ago
7
TUU example with 1000 replicas fails on Stampede:
#33
antonst
opened
9 years ago
18
after adding math exp check, the exchange index seems not running right
#32
taisung
opened
9 years ago
6
Input transfer failed error in RepEx
#31
taisung
closed
8 years ago
10
No umbrella restraint is included in the md input files in the current TUU implementation.
#30
taisung
closed
9 years ago
1
TUU example not working (6-1-2015 morning check-out)
#29
taisung
closed
8 years ago
2
U dimension not exchanging (TUU)
#28
haoyuanchen
closed
9 years ago
6
RepEX 3D cannot execute (05/27/15 morning fresh checkout).
#27
taisung
closed
9 years ago
10
3d replica issue
#26
haoyuanchen
closed
9 years ago
3
Amber performance degradation for MD step
#25
antonst
closed
9 years ago
2
problems in salt concentration dimension of 2d
#24
haoyuanchen
closed
9 years ago
0
RepEX cannot execute (04/23/15 morning fresh checkout).
#23
taisung
closed
9 years ago
26
umbrella sampling swap matrix all zero (2d-prof branch)
#22
haoyuanchen
closed
9 years ago
2
AttributeError: 'NoneType' object has no attribute 'uid'
#21
jhonsen
closed
9 years ago
5
unnecessary file transfer for MD step
#20
haoyuanchen
closed
9 years ago
0
new_coor not accessible in exchange step
#19
haoyuanchen
closed
9 years ago
1
ValueError: too many values to unpack
#18
antonst
closed
9 years ago
3
defining exchange groups in 2D
#17
haoyuanchen
closed
9 years ago
1
some issues for 2d
#16
antonst
closed
8 years ago
2
Exchange step times for 2d Amber example
#15
antonst
closed
8 years ago
1
Amber 2d example hangs
#14
antonst
closed
9 years ago
5
input json file not parsed correctly?
#13
haoyuanchen
closed
9 years ago
2
RepEx 2d doesn't work (see below)
#12
taisung
closed
9 years ago
1
add "project" parameter in json config file for scheme 3
#11
vivek-bala
closed
9 years ago
1
scheme 2a amber stalled
#10
marksantcroos
closed
9 years ago
0
testing document
#9
shantenujha
closed
9 years ago
4
The scheme #2 and #2a seem not working for AMBER on Stampede
#8
taisung
closed
9 years ago
2
job crashed but still appears as "R" when qstat
#7
haoyuanchen
closed
9 years ago
4
Specifying XSEDE account info in config file
#6
antonst
closed
9 years ago
1
default NAMD crashes, have to use my own NAMD
#5
haoyuanchen
closed
10 years ago
4
Na
#4
antonst
closed
10 years ago
0
How to run? What to run?
#3
shantenujha
closed
10 years ago
1
typo?
#2
shantenujha
closed
10 years ago
1
documentation needs to be updated to reflect the need to set mongodb config, else there are error
#1
shantenujha
closed
10 years ago
2
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