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MiniMarS
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FindAllMarkers."MAST method"
#56
mnabdelnabi
opened
2 months ago
0
Dev
#55
raymondlouie
closed
5 months ago
0
R documentation is not updating (e.g., FindClusterMarkers) when looking at help age in Rstudio
#54
raymondlouie
opened
6 months ago
0
Update README.md
#53
dhrutiparikh
closed
6 months ago
0
Check KLRG1 typo in CyTOF-citeseq dataset
#52
raymondlouie
opened
6 months ago
0
Update description to include seurat methods
#51
raymondlouie
opened
6 months ago
0
Update README.md
#50
dhrutiparikh
closed
6 months ago
0
Minimum cell numbers required by citeFuse
#49
anglixue
opened
6 months ago
0
Error in randomForest.default
#48
anglixue
opened
7 months ago
0
Seurat 5 new layers is causing errors with sc2marker
#47
raymondlouie
opened
10 months ago
0
Dev
#46
anglixue
closed
7 months ago
1
Error in geneBasisR::gene_search, Selected library size should be smaller than number of genes in the counts matrix.
#45
anglixue
closed
11 months ago
1
Error: $ operator is invalid for atomic vectors
#44
anglixue
closed
11 months ago
1
Description of all metrics for assessment
#43
HsiaoChiLiao
opened
1 year ago
0
Error in input_matrix[, markers_fstat] : subscript out of bounds
#42
anglixue
closed
1 year ago
2
Dev
#41
anglixue
closed
1 year ago
0
Provide elbow point results for minimum markers
#40
Felixillion
opened
1 year ago
0
Issues: testing the findClusterMarkers function with dataset3 (adt198)
#39
HsiaoChiLiao
opened
1 year ago
2
nrounds in performanceAllMarkers()
#38
anglixue
closed
1 year ago
2
Error from findClusterMarkers (v0.1.3)
#37
HsiaoChiLiao
closed
1 year ago
3
Error with xgBoost when using scRNA-seq data
#36
dhrutiparikh
closed
1 year ago
3
Other issues discussed
#35
raymondlouie
opened
1 year ago
0
Felix's suggestion: how well a predefined panel works
#34
raymondlouie
opened
1 year ago
1
XgBoost error
#33
raymondlouie
closed
1 year ago
1
Claire's comment: how is consensus updated?
#32
raymondlouie
opened
1 year ago
2
Claire's comment: Upset plot
#31
raymondlouie
opened
1 year ago
0
Claire's comment: Quantitive measure for each marker
#30
raymondlouie
opened
1 year ago
1
Claire's comment: how many markers to choose?
#29
raymondlouie
opened
1 year ago
2
Claire's comment: associating clusters with markers
#28
raymondlouie
opened
1 year ago
1
Update README.md
#27
dhrutiparikh
closed
1 year ago
1
Error with citeFuse - using subsamples (seed=8) of dataset1_LEU
#26
HsiaoChiLiao
opened
1 year ago
14
subsamples from the processSubsampling function
#25
HsiaoChiLiao
closed
1 year ago
2
Error in plotMarkers() for dataset 4
#24
anglixue
opened
1 year ago
3
Error with dataset 4
#23
anglixue
closed
1 year ago
10
Dev
#22
raymondlouie
closed
1 year ago
0
Error with geneBasis
#21
HsiaoChiLiao
closed
1 year ago
2
layout of the description of the public datasets
#20
HsiaoChiLiao
closed
1 year ago
0
Run time for each method as a part of the output
#19
HsiaoChiLiao
closed
1 year ago
3
Error with sc2marker
#18
dhrutiparikh
closed
1 year ago
9
Check for Dataset 4
#17
anglixue
closed
1 year ago
2
Consensus method always run
#16
Felixillion
closed
1 year ago
1
Errors with sc2marker and geneBasis
#15
HsiaoChiLiao
closed
1 year ago
6
Error with geneBasis
#14
Felixillion
closed
1 year ago
3
Error installing dev branch
#13
Felixillion
opened
1 year ago
5
more info for public datasets
#12
HsiaoChiLiao
closed
1 year ago
0
Error: object 'seurat_data' not found
#11
anglixue
closed
1 year ago
6
Error: No cell name in data
#10
raymondlouie
closed
1 year ago
0
Dev
#9
raymondlouie
closed
1 year ago
0
Dev
#8
raymondlouie
closed
1 year ago
0
Update README.md
#7
anglixue
closed
1 year ago
0
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