reneshbedre bioinfokit issues

reneshbedre / bioinfokit

Bioinformatics data analysis and visualization toolkit

MIT License

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issues

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Bar-dot plot standard deviation issue

#71 FraenzeMueller opened 3 months ago
0
gff to gtf file conversion

#70 Shukla04 opened 4 months ago
0
Tukey HSD function throws a TypeError, even with example code

#69 kuoirene opened 7 months ago
2
updated pandas mean calculation for new mean() numeric_only default value in pandas 1.5.0

#68 victormvy opened 9 months ago
1
Doubts about gff to gtf conversion

#67 z626093820 opened 1 year ago
0
gff3 to gtf file conversion

#66 rbadmi opened 1 year ago
0
bardot-theme-error

#65 shab-sa opened 1 year ago
0
visuz.stat.bardot Theme is not defined

#64 RaminKahidi opened 1 year ago
1
Change assert to warning in visuz.py

#63 whatever60 opened 1 year ago
0
install issues

#62 Yu1833 opened 1 year ago
1
Manhattan Plot Out of Order

#61 hpoisner opened 1 year ago
2
Is it possible to extract the dataframe from heatmap after zscaling?

#60 Sameerpython opened 1 year ago
1
Reduce font size of the legend in volcano plot

#59 Shukla04 opened 1 year ago
1
Customizing plots

#58 kirillkrs opened 1 year ago
0
Highlighting points of interest

#57 ConstanzeT opened 1 year ago
1
marker size and shape in bioinfokit.visuz.cluster.pcaplot

#56 amir-tagh opened 1 year ago
1
assertion error for non-significant genes in lfc

#55 lraghavendran closed 1 year ago
1
NameError: name 'color_result' is not defined

#54 grace3999 opened 1 year ago
1
'gbk' codec can't decode byte 0xa6 in position 54094: illegal multibyte sequence

#53 matarina opened 2 years ago
0
Axis limits cannot be NaN or Inf

#52 mbaddoo closed 1 year ago
1
Add Plotting of Arbitrary Principal Components

#51 richy1996 opened 2 years ago
0
It is possible to create a volcano plot without significant genes?

#50 diitaz93 closed 1 year ago
1
is it possible to save the plot in another directory?

#49 hfl112 opened 2 years ago
1
resolve encoding problem in installing

#48 koptimizer opened 2 years ago
0
Fixed some bugs in Manhattan plotting

#47 li-liwen opened 2 years ago
0
error: dataframe contains non-numeric values in pv column

#46 daschukds closed 2 years ago
1
Could you make it to save fig as vector file like svg?

#45 daschukds closed 2 years ago
0
module 'bioinfokit.visuz' has no attribute 'GeneExpression'

#44 daschukds closed 2 years ago
2
Volcano plot title

#43 csamuel11 opened 2 years ago
3
Offsetting text and editing axis titles in biplots?

#42 victorialindsay opened 2 years ago
0
Error in volcano plot

#41 mohamedgadallah closed 2 years ago
1
Limit dropna to named variables in ttest

#40 JILPulvino closed 1 year ago
1
AssertionError: either significant or non-significant genes are missing; try to change lfc_thr or pv_thr to include both significant and non-significant genes

#39 Ytlee413 closed 2 years ago
1
Can't install bioinfokit

#38 ZJJane closed 2 years ago
1
UnicodeDecodeError: 'gbk' codec can't decode byte 0xa6 in position 63494: illegal multibyte sequence

#37 meiyongdeaji opened 2 years ago
0
Error with vcf file split

#36 stanislavzlp opened 2 years ago
0
Gene expression correlation analysis question

#35 ehinderer closed 2 years ago
2
from bioinfokit.analys import stat

#34 angelinaquan closed 2 years ago
0
error with saving figure with figname

#33 justinesjw closed 2 years ago
1
coloring points in PCA plots

#32 mbaddoo closed 3 years ago
1
AssertionError: either significant or non-significant genes are missing; try to change lfc_thr or pv_thr to include both significant and non-significant genes

#31 arturomarin closed 2 years ago
1
genenames='deg' don't work in volcano plot script

#30 arturomarin closed 3 years ago
1
Multiple plot windows

#29 vappiah closed 2 years ago
1
skip empty lines while reading GFF files

#28 stevin-wilson opened 3 years ago
0
Saving Plots in High Resolution

#27 vappiah closed 3 years ago
2
Possible typos - color_result in visuz.py

#26 GanshengT closed 3 years ago
2
FASTQ batch downloads from SRA database not working for Windows

#25 DeevanshuGoyal closed 3 years ago
1
Manhattan plot with fst

#24 vappiah closed 3 years ago
3
Normalization on TCGA dataset

#23 vappiah closed 3 years ago
2
Volcano plot - AssertionError: either significant or non-significant genes are missing; try to change lfc_thr or pv_thr to include both significant and non-significant genes

#22 tomasflyo closed 3 years ago
6