robertaboukhalil ginkgo issues

robertaboukhalil / ginkgo

Cloud-based single-cell copy-number variation analysis tool

qb.cshl.edu/ginkgo

BSD 2-Clause "Simplified" License

47 stars 28 forks source link

issues

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No server availble for the tasks

#47 wmyuan37 opened 7 months ago
2
Cannot select any cells in Step1

#46 RonjaJohnen opened 11 months ago
3
Gateway timeout

#45 sbradford2 opened 1 year ago
0
Failed to upload the .bed or .bed.gz

#44 wmyuan37 closed 1 year ago
2
Individual MAD score with command line (standalone)

#43 srbehera opened 1 year ago
0
Error in clip(tu[1], mean(temp) - (diff(reads$mids)/2), tu[3], tu[4])

#42 srbehera closed 1 year ago
1
Web platform - processing issues

#41 leachim opened 2 years ago
0
Stalling during Calling copy number events (Computing Cluster (Copy Number))

#40 ncasiraghi opened 2 years ago
2
The input file format

#39 biowumin closed 2 years ago
1
Analysis stuck at 66%

#38 RudolfWach closed 3 years ago
1
Web-platform: doesn't work

#37 dulunar closed 2 years ago
1
Bad bin is not provided in pre-calculated hg19 genome

#36 liuzhenyu-yyy closed 3 years ago
2
Stalling during copy number calling (initializing variables)

#35 andrewrlynch closed 3 years ago
2
duplicates/secondaries

#34 kunalkathuria closed 4 years ago
2
CNV1 vs CNV2?

#33 kunalkathuria closed 4 years ago
3
Analysis time

#32 yifnzhao closed 4 years ago
2
hg38

#31 pawelqs opened 4 years ago
4
Command line GinkGo

#30 pawelqs closed 4 years ago
4
Using Ginkgo on a cell by bin matrix

#29 pedrofale closed 4 years ago
4
Web-platform: Error Gateway Time-out

#28 silvainp closed 4 years ago
3
Something about reference

#27 jasminexiao closed 4 years ago
3
bounds_variable files

#26 kunalkathuria closed 4 years ago
2
Running cells with second-best SoS solution?

#25 laurenhummel closed 5 years ago
1
Bad Bin -> coordinate map?

#24 kunalkathuria closed 5 years ago
2
Lorenz-based cutoff metric?

#23 kunalkathuria closed 5 years ago
2
bed.gz files not visible

#22 kunalkathuria closed 5 years ago
0
planning to add hg38 support?

#21 vleblanc closed 5 years ago
1
untar database

#20 hlxie closed 5 years ago
1
Improve CLI usage

#19 jherrero closed 5 years ago
0
server down?

#18 proukakis closed 5 years ago
3
MAD exact

#17 mariakalyva closed 5 years ago
11
Uploading issue

#16 rujinwang closed 5 years ago
5
Ginkgo Web Platform: Extracting Read count data

#15 jirianto closed 5 years ago
2
Issue #13: FACS file parsing breaking

#14 robertaboukhalil closed 5 years ago
3
Gingko Web Platform: Copy number calls stalling with FACS input.

#13 andrewrlynch opened 5 years ago
12
Fixed MAD analysis for a subset of cells

#12 jpritt closed 6 years ago
1
Genomes data url cannot be accessed.

#11 zhanghao-njmu closed 6 years ago
1
Can Gingko be used to determine CNVs from single cell RNA seq data?

#10 kragrawa closed 6 years ago
1
problem in the R code

#9 RichardCorbett closed 7 years ago
4
How to define the reference sample?

#8 anyone1985 closed 7 years ago
4
Patch for issue #6

#7 robertaboukhalil closed 7 years ago
0
BWA bin boundaries disagree with bowtie bin boundaries

#6 mschatz closed 7 years ago
3
Phylogenetic Tree output?

#5 jmfa closed 7 years ago
3
standalone ginkgo: SegCopy not found?

#4 biocyberman closed 7 years ago
6
Standalone mode

#3 jherrero closed 8 years ago
1
Typos + support BED files without 'chr' in binUnsorted

#2 jherrero closed 8 years ago
0
Update analyze

#1 tgarvin closed 11 years ago
0