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rr1859
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R.4Cker
MIT License
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How does nearBait and cis compare near the bait?
#63
jonasungerback
opened
2 years ago
0
issue with step 3: removing self ligated and undigested fragments
#62
rrueda89
opened
3 years ago
0
Error in DESeqDataSet(se, design = design, ignoreRank)
#61
eandresleon
closed
3 years ago
1
Comprehension issues in output files
#60
R-PatricioMonteiro
opened
4 years ago
0
Create LICENSE
#59
rr1859
closed
5 years ago
0
reduced genome script: sed extra character
#58
fiwong
opened
5 years ago
12
Release info
#57
matthdsm
opened
5 years ago
2
reduced_genome.sh weird extension addition
#56
jvandinter
closed
5 years ago
4
non-numeric argument
#55
Inswasti
closed
6 years ago
2
bypassing QC and asymmetrical replicates
#54
Inswasti
closed
6 years ago
0
nbanalysis error, seq.default
#53
Inswasti
closed
6 years ago
1
error in nb_results and trans analysis
#52
DimitrisZisis
opened
6 years ago
0
reduce_genome fasta file.
#51
DimitrisZisis
closed
6 years ago
0
Error in nearBaitAnalysis
#50
autobot101
closed
6 years ago
2
nearbait error
#49
DimitrisZisis
opened
6 years ago
3
TRANS analysis
#48
AvitalPo
opened
6 years ago
1
Issue with near bait analysis
#47
openpaul
opened
6 years ago
1
Trying to do differential analysis with no replicates
#46
dotaa
opened
6 years ago
0
Currently a NULL object is being returned.
#45
sameet
opened
6 years ago
0
unable to plot using ggplot2, object 'count' not found
#44
dotaa
opened
6 years ago
5
How to deal the paired-end data
#43
zhaocheng3326
opened
6 years ago
3
unable to map using bowtie and generate bedGraph
#42
dotaa
closed
6 years ago
4
Something odd in differentialAnalysis
#41
Rseq
closed
6 years ago
6
About step 3. Removing the self-ligated and undigested fragments and a suggestion to pipelines
#40
rvidal404
opened
7 years ago
5
About generated reduced genome.
#39
sameet
opened
7 years ago
2
What if I have only one replicate per condition, and is there any way to ignore the QC?
#38
sameet
closed
7 years ago
2
Error from 4Cker tranAnalysis
#37
amarsh33
opened
7 years ago
2
reduced genome and enz_file
#36
nagoue
opened
7 years ago
4
reduced_genome.sh gives no output
#35
Lissy28
opened
7 years ago
9
How to use analyse using multiple baits?
#34
sameet
opened
7 years ago
2
Bowtie 2 mapping w/ reduced genome
#33
aliu90
opened
7 years ago
2
Ignore QC filter
#32
rantingswede373
opened
7 years ago
2
reduced_genome.sh error on #get only sequences from FASTA file
#31
trotos
opened
7 years ago
5
error
#30
trotos
closed
7 years ago
0
parameter estimation issues
#29
daler
opened
7 years ago
5
reduced genome, Bowtie command clarification.
#28
trotos
opened
7 years ago
3
cisAnalysis error
#27
geneticoman
opened
7 years ago
0
reduced_genome.sh error - grep: memory exhausted
#26
ml31k
opened
7 years ago
6
cis analysis does not agree with the bedGraph
#25
iprada
opened
7 years ago
4
4Cker identifes regions that are outside the chromosome
#24
iprada
opened
7 years ago
2
Error in nearBaitAnalysis
#23
geneticoman
opened
7 years ago
1
bed files are not sorted
#22
geneticoman
opened
7 years ago
2
Inconsistencies with Interaction Counts
#21
aliu90
opened
7 years ago
2
reduced_genome.sh output has restriction enzyme sites
#20
iprada
closed
7 years ago
2
reduced_genome.sh takes a lot
#19
iprada
closed
7 years ago
9
'nearbait_size' for Different Model Organisms
#18
MediciPrime
closed
7 years ago
2
error messages in reduced_genome.sh
#17
lwtan90
opened
7 years ago
2
Secondary Enzyme??
#16
lwtan90
opened
7 years ago
2
Unable to reproduce results.
#15
MediciPrime
closed
7 years ago
2
warning messages in nearBaitAnalysis and cisAnalysis
#14
nagoue
closed
7 years ago
4
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