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salvadorlab
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mbovpan
Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.
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Fix post_fastqc
#29
BellaArenas
opened
2 months ago
0
Filter pangenome
#28
noahaus
closed
3 months ago
0
mbovpan rewrite + update
#27
noahaus
opened
7 months ago
0
Core phylogeny + hypothetical protein naming using BLAST
#26
noahaus
closed
7 months ago
3
scoary and pangenome curve output
#25
noahaus
closed
7 months ago
4
gene_prab and accessory_pca scripts
#24
noahaus
closed
7 months ago
7
code restructured for manuscript submission
#23
noahaus
closed
9 months ago
0
Send to Liliana
#22
noahaus
opened
10 months ago
4
Software Enhancements
#21
noahaus
closed
7 months ago
4
Adding mbovpan to Anaconda
#20
noahaus
closed
1 year ago
1
Quality Checks before running
#19
noahaus
closed
10 months ago
1
Downloading via bioconda
#18
noahaus
closed
10 months ago
8
Adding more parameters for 'pan' mode
#17
noahaus
closed
1 year ago
1
Convert nextflow code to DSL 2
#16
noahaus
opened
1 year ago
0
Fix gene_prab and accessory_pca
#15
noahaus
closed
1 year ago
5
Fix and generalize PAN mode
#14
noahaus
closed
1 year ago
2
Dev
#13
noahaus
closed
1 year ago
0
Dev
#12
noahaus
closed
1 year ago
0
Add Lineage determination
#11
noahaus
closed
1 year ago
1
Scripts to fix
#10
noahaus
closed
1 year ago
1
Investigate switching from conda to mamba for quicker installation
#9
noahaus
closed
1 year ago
1
Standardizing Naming throughout the pipeline.
#8
noahaus
closed
1 year ago
3
README file needs to be updated
#7
noahaus
closed
1 year ago
7
Basic Code Changes
#6
noahaus
closed
1 year ago
2
Put processes in separate code files
#5
noahaus
closed
2 years ago
0
Statistics
#4
noahaus
closed
1 year ago
1
SNP Calling Outputs
#3
noahaus
closed
2 years ago
2
Pangenome Outputs
#2
noahaus
closed
2 years ago
3
MultiQC reports
#1
noahaus
closed
2 years ago
1