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timbitz
/
Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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21
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Whippet install issue with HttpParser
#51
AndrewLangvt
closed
6 years ago
4
Update README.md
#50
timbitz
closed
7 years ago
1
Cannot build whippet...
#49
nickschurch
closed
6 years ago
5
Reduce graph perf
#48
timbitz
closed
7 years ago
1
Reduce graph bugfix
#47
timbitz
closed
7 years ago
1
Critical bug introduced in #43
#46
timbitz
closed
7 years ago
1
Output Edges:Read Counts in `.psi.gz`
#45
timbitz
closed
7 years ago
1
Warn TSL2+ index building
#44
timbitz
closed
7 years ago
1
Output Update for Constitutive PSI
#43
timbitz
closed
7 years ago
1
PSI = 0.99 when no reads on event
#42
mirimia
closed
7 years ago
2
Cleanup unused code
#41
timbitz
closed
7 years ago
1
EM multiply by effective length
#40
timbitz
closed
7 years ago
0
Overhaul of alignment and SAM formatting
#39
timbitz
closed
7 years ago
0
Bugfix Merge, Whippet v0.5.1
#38
timbitz
closed
7 years ago
2
Incorrect SAM output.
#37
timbitz
closed
7 years ago
0
Junction output
#36
timbitz
closed
7 years ago
1
Faster Whippet v0.5
#35
timbitz
closed
7 years ago
2
Whippet Index Too Sloooow
#34
timbitz
closed
7 years ago
1
Support Multithreading
#33
timbitz
opened
7 years ago
0
Compatibility with Julia v0.5
#32
timbitz
closed
7 years ago
2
Remove deprecated and unexecuted/untested code
#31
timbitz
closed
7 years ago
1
Exhaustive Alignment Mode
#30
timbitz
opened
7 years ago
0
Julia v0.5 release
#29
timbitz
closed
7 years ago
1
EBI Accession and HTTP Streaming FASTQ Processing
#28
timbitz
closed
7 years ago
1
Type Stability and Performance
#27
timbitz
closed
8 years ago
0
Whippet v0.3
#26
timbitz
closed
8 years ago
0
Basic Documentation
#25
timbitz
closed
8 years ago
0
Complexity Nomenclature change and Shannon's Entropy
#24
timbitz
closed
8 years ago
11
Wrapper Executable
#23
timbitz
opened
8 years ago
0
SAM output for circular splicing as chimeric alignments
#22
timbitz
opened
8 years ago
0
Make alignment score proportional to read-length
#21
timbitz
closed
8 years ago
0
Bio v0.2 Support
#20
timbitz
closed
8 years ago
1
Wrong qual encoding used for some FASTQ entries
#19
timbitz
closed
8 years ago
0
Annotations + Graph Building + Tests
#18
timbitz
closed
8 years ago
0
Annotations + Graph Building + Tests
#17
timbitz
closed
8 years ago
0
Full Isoforms
#16
timbitz
opened
8 years ago
2
Release v0.1-rc4
#15
timbitz
closed
8 years ago
0
Expand on SAM flags/reporting used
#14
timbitz
closed
8 years ago
0
Release v0.1-rc3
#13
timbitz
closed
8 years ago
2
Release v0.1-rc2
#12
timbitz
closed
8 years ago
0
whippet-delta.jl with Differential Splicing
#11
timbitz
closed
8 years ago
0
Incorporate Mappability
#10
timbitz
opened
8 years ago
0
Fix SAM output
#9
timbitz
closed
8 years ago
0
fix NaN for TS and CE for short reads
#8
timbitz
closed
8 years ago
0
Pre-release merge
#7
timbitz
closed
8 years ago
0
Visualization of Splicing Events
#6
timbitz
opened
8 years ago
2
Paired
#5
timbitz
closed
8 years ago
1
Differential splicing analysis for whippet results
#4
timbitz
closed
8 years ago
0
Release Features
#3
timbitz
closed
8 years ago
2
Start coordinate > end coordinate by 1 for a few RI cases
#2
kcha
closed
8 years ago
3
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