tlambert03 nd2 issues - Githubissues

tlambert03 / nd2

Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction

https://tlambert03.github.io/nd2

BSD 3-Clause "New" or "Revised" License

54 stars 15 forks source link

issues

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ci(dependabot): bump codecov/codecov-action from 4 to 5

#245 dependabot[bot] opened 1 week ago
1
[test-bot] pip install --pre is failing

#244 github-actions[bot] opened 3 weeks ago
0
ci(pre-commit.ci): autoupdate

#243 pre-commit-ci[bot] opened 3 weeks ago
2
feat: dask chunking on frame level implemented

#242 gatoniel opened 2 months ago
7
build: test py3.13

#241 tlambert03 opened 2 months ago
2
fix: fix for dask 2024.8

#240 tlambert03 closed 2 months ago
2
Warning about garbage collection, even with "with", with dask 2024.8

#239 cmalinmayor closed 2 months ago
3
Export position names to OME metadata

#238 anntzer opened 3 months ago
0
[test-bot] pip install --pre is failing

#237 github-actions[bot] closed 2 months ago
0
ci(pre-commit.ci): autoupdate

#236 pre-commit-ci[bot] closed 2 months ago
2
ci(dependabot): bump CodSpeedHQ/action from 2 to 3

#235 dependabot[bot] closed 2 months ago
1
ci(pre-commit.ci): autoupdate

#234 pre-commit-ci[bot] closed 4 months ago
2
fix: tqdm -> tqdm.auto, for notebook users

#233 georgeoshardo closed 5 months ago
2
How to convert ROI coordinates from relative to pixels

#232 Kees-van-der-Oord-Nikon opened 5 months ago
3
[test-bot] pip install --pre is failing

#231 github-actions[bot] closed 5 months ago
0
[test-bot] pip install --pre is failing

#230 github-actions[bot] closed 6 months ago
0
ci(pre-commit.ci): autoupdate

#229 pre-commit-ci[bot] closed 5 months ago
2
[test-bot] pip install --pre is failing

#228 github-actions[bot] closed 7 months ago
0
test: drop aicsimageio test

#227 tlambert03 closed 7 months ago
2
fix: Fix datetime extraction

#226 tlambert03 closed 7 months ago
2
Issue with saving nd2 to ome-tiff

#225 BornKrefeld closed 7 months ago
1
[test-bot] pip install --pre is failing

#224 github-actions[bot] closed 7 months ago
1
Error with saving nd2 file as ome-tiff file

#223 BornKrefeld closed 7 months ago
2
Save a single channel in nd2 to numpy

#222 BornKrefeld closed 7 months ago
1
Update _ome.py

#221 rysk-t closed 7 months ago
5
ci(pre-commit.ci): autoupdate

#220 pre-commit-ci[bot] closed 7 months ago
2
[test-bot] pip install --pre is failing

#219 github-actions[bot] closed 7 months ago
0
feat: better color object

#218 tlambert03 closed 8 months ago
2
feat: add to_ome_tif method

#217 fdrgsp closed 8 months ago
5
feat: add `write_tiff` export to OME-TIFF, include full metadata as StructuredAnnotation

#216 tlambert03 closed 8 months ago
8
feat: export to OME-TIFF, include full metadata as StructuredAnnotation

#215 tlambert03 closed 8 months ago
0
ci(dependabot): bump softprops/action-gh-release from 1 to 2

#214 dependabot[bot] closed 8 months ago
1
chore: use ruff format, add typos

#213 tlambert03 closed 9 months ago
2
todo: improve handling of files with subloops

#212 tlambert03 opened 9 months ago
0
bioio-nd2 failing to load from large file

#211 toloudis closed 9 months ago
1
ci: try reusable workflow

#210 tlambert03 closed 9 months ago
1
chore: remove old deprecations

#209 tlambert03 closed 9 months ago
2
build: drop python 3.7

#208 tlambert03 closed 9 months ago
2
[test-bot] pip install --pre is failing

#207 github-actions[bot] closed 9 months ago
0
ci(pre-commit.ci): autoupdate

#206 pre-commit-ci[bot] closed 9 months ago
2
ci(dependabot): bump codecov/codecov-action from 3 to 4

#205 dependabot[bot] closed 9 months ago
2
ci(dependabot): bump actions/cache from 3 to 4

#204 dependabot[bot] closed 10 months ago
2
[test-bot] pip install --pre is failing

#203 github-actions[bot] closed 9 months ago
0
[test-bot] pip install --pre is failing

#202 github-actions[bot] closed 10 months ago
0
ci(pre-commit.ci): autoupdate

#201 pre-commit-ci[bot] closed 10 months ago
2
tests: lxml on >=39

#200 tlambert03 closed 11 months ago
2
[test-bot] pip install --pre is failing

#199 github-actions[bot] closed 11 months ago
0
ci(dependabot): bump actions/setup-python from 4 to 5

#198 dependabot[bot] closed 11 months ago
2
ci(pre-commit.ci): autoupdate

#197 pre-commit-ci[bot] closed 11 months ago
2
ci(dependabot): bump CodSpeedHQ/action from 1 to 2

#196 dependabot[bot] closed 11 months ago
2