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tlambert03
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nd2
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
https://tlambert03.github.io/nd2
BSD 3-Clause "New" or "Revised" License
51
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15
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[test-bot] pip install --pre is failing
#237
github-actions[bot]
opened
1 week ago
0
ci(pre-commit.ci): autoupdate
#236
pre-commit-ci[bot]
opened
3 weeks ago
2
ci(dependabot): bump CodSpeedHQ/action from 2 to 3
#235
dependabot[bot]
opened
4 weeks ago
1
ci(pre-commit.ci): autoupdate
#234
pre-commit-ci[bot]
closed
1 month ago
2
fix: tqdm -> tqdm.auto, for notebook users
#233
georgeoshardo
closed
2 months ago
2
How to convert ROI coordinates from relative to pixels
#232
Kees-van-der-Oord-Nikon
opened
2 months ago
3
[test-bot] pip install --pre is failing
#231
github-actions[bot]
closed
2 months ago
0
[test-bot] pip install --pre is failing
#230
github-actions[bot]
closed
3 months ago
0
ci(pre-commit.ci): autoupdate
#229
pre-commit-ci[bot]
closed
2 months ago
2
[test-bot] pip install --pre is failing
#228
github-actions[bot]
closed
4 months ago
0
test: drop aicsimageio test
#227
tlambert03
closed
4 months ago
2
fix: Fix datetime extraction
#226
tlambert03
closed
4 months ago
2
Issue with saving nd2 to ome-tiff
#225
BornKrefeld
closed
4 months ago
1
[test-bot] pip install --pre is failing
#224
github-actions[bot]
closed
4 months ago
1
Error with saving nd2 file as ome-tiff file
#223
BornKrefeld
closed
4 months ago
2
Save a single channel in nd2 to numpy
#222
BornKrefeld
closed
4 months ago
1
Update _ome.py
#221
rysk-t
closed
4 months ago
5
ci(pre-commit.ci): autoupdate
#220
pre-commit-ci[bot]
closed
4 months ago
2
[test-bot] pip install --pre is failing
#219
github-actions[bot]
closed
4 months ago
0
feat: better color object
#218
tlambert03
closed
5 months ago
2
feat: add to_ome_tif method
#217
fdrgsp
closed
5 months ago
5
feat: add `write_tiff` export to OME-TIFF, include full metadata as StructuredAnnotation
#216
tlambert03
closed
5 months ago
8
feat: export to OME-TIFF, include full metadata as StructuredAnnotation
#215
tlambert03
closed
5 months ago
0
ci(dependabot): bump softprops/action-gh-release from 1 to 2
#214
dependabot[bot]
closed
5 months ago
1
chore: use ruff format, add typos
#213
tlambert03
closed
5 months ago
2
todo: improve handling of files with subloops
#212
tlambert03
opened
6 months ago
0
bioio-nd2 failing to load from large file
#211
toloudis
closed
6 months ago
1
ci: try reusable workflow
#210
tlambert03
closed
6 months ago
1
chore: remove old deprecations
#209
tlambert03
closed
6 months ago
2
build: drop python 3.7
#208
tlambert03
closed
6 months ago
2
[test-bot] pip install --pre is failing
#207
github-actions[bot]
closed
6 months ago
0
ci(pre-commit.ci): autoupdate
#206
pre-commit-ci[bot]
closed
6 months ago
2
ci(dependabot): bump codecov/codecov-action from 3 to 4
#205
dependabot[bot]
closed
6 months ago
2
ci(dependabot): bump actions/cache from 3 to 4
#204
dependabot[bot]
closed
7 months ago
2
[test-bot] pip install --pre is failing
#203
github-actions[bot]
closed
6 months ago
0
[test-bot] pip install --pre is failing
#202
github-actions[bot]
closed
7 months ago
0
ci(pre-commit.ci): autoupdate
#201
pre-commit-ci[bot]
closed
7 months ago
2
tests: lxml on >=39
#200
tlambert03
closed
8 months ago
2
[test-bot] pip install --pre is failing
#199
github-actions[bot]
closed
8 months ago
0
ci(dependabot): bump actions/setup-python from 4 to 5
#198
dependabot[bot]
closed
8 months ago
2
ci(pre-commit.ci): autoupdate
#197
pre-commit-ci[bot]
closed
8 months ago
2
ci(dependabot): bump CodSpeedHQ/action from 1 to 2
#196
dependabot[bot]
closed
8 months ago
2
[test-bot] pip install --pre is failing
#195
github-actions[bot]
closed
9 months ago
0
refactor: simplify strides
#194
tlambert03
closed
9 months ago
2
fix: hacky fix for files with subloops
#193
tlambert03
closed
6 months ago
4
fix: access more frames via direct read_frame() method
#192
tlambert03
closed
9 months ago
2
docs: fix emoji links in docs build
#191
tlambert03
closed
9 months ago
1
Missing axis
#190
aaristov
closed
6 months ago
10
ci(pre-commit.ci): autoupdate
#189
pre-commit-ci[bot]
closed
9 months ago
2
test: fix aicsimageio test
#188
tlambert03
closed
9 months ago
2
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