ucl-cssb MIMIC issues - Githubissues

ucl-cssb / MIMIC

Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions

MIT License

5 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Pacman example and examples/gLV update

#74 ChaniaClare closed 2 weeks ago
0
[Feature]: Merge the `utilities.py` script into the `base_model.py` for simulation methods or to a second base class only for gLV or gMLV methods

#73 Fontanapink opened 2 weeks ago
0
[Feature]: Add base class for INFER classes

#72 Fontanapink closed 2 weeks ago
0
[Bug]: Remove all unecesary files like posterior calculations, and adds them to .gitignore

#71 Fontanapink closed 1 month ago
0
[Feature]: Enhance all of the example files

#70 Fontanapink opened 1 month ago
0
[Bug]: Remove all unecesary files like posterior calculations

#69 Fontanapink closed 1 month ago
0
[Feature]: Add base class for INFER classes

#68 Fontanapink closed 2 weeks ago
0
Updated documentation

#67 Fontanapink closed 2 months ago
0
Herold 2020 example use of MIMIC

#66 Fontanapink closed 2 months ago
0
Create documentation_generation.yml

#65 Fontanapink closed 2 months ago
0
Create infer_gLV_bayes class

#64 ChaniaClare closed 3 months ago
0
Added interaction matrix plot function to infer_gLV_bayes class

#63 ChaniaClare closed 3 months ago
0
Create bayes mcmc class

#62 ChaniaClare closed 3 months ago
0
Create bayes mcmc class

#61 ChaniaClare closed 3 months ago
0
Herold Example update using metabolic and abundance datasets

#60 Fontanapink closed 3 months ago
0
VARsim-infer

#59 Fontanapink closed 3 months ago
0
MVAR inference methods and examples

#58 Fontanapink closed 3 months ago
1
Packaging

#57 Fontanapink closed 4 months ago
0
GPregression

#56 Fontanapink closed 4 months ago
1
sVARsim -> MVARsim

#55 cpbarnes closed 4 months ago
1
GPregression

#54 Fontanapink closed 4 months ago
0
Packaging

#53 Fontanapink closed 4 months ago
0
Clean-up

#52 Fontanapink closed 5 months ago
1
Dev-AF-merge

#51 Fontanapink closed 5 months ago
0
Fontanapink/issue41

#50 Fontanapink closed 6 months ago
0
Have a utility function/method to programmatically create matrices (for coefficients and interactions)?

#49 Fontanapink opened 6 months ago
0
Do this programmatically (see how the class is initiated and use the same logic to generate the default parameters for the simulation type.)

#48 Fontanapink opened 6 months ago
0
Implement BaseClass models for Model Simulations

#47 Fontanapink closed 6 months ago
0
Change the default parameter generation to whatever dimension the user wants. Right now it's hardcoded to 2.

#46 Fontanapink opened 6 months ago
0
Updated documentation with new naming convention

#45 Fontanapink closed 7 months ago
0
Packaging updates

#44 Fontanapink closed 7 months ago
0
add version to the documentation and how to automatically update it

#43 Fontanapink opened 7 months ago
0
Packaging updates and project re-structure

#42 Fontanapink closed 7 months ago
0
Generate a base class for all simulations and inferences

#41 Fontanapink closed 6 months ago
0
see to delete this before merging

#40 Fontanapink opened 7 months ago
0
make these arguments specifiable in the parameters.json file file

#38 Fontanapink opened 7 months ago
0
VARsimulation

#37 Fontanapink closed 7 months ago
0
Packaging Updates and Documentation

#36 Fontanapink closed 7 months ago
1
VARsimulation

#35 Fontanapink closed 7 months ago
0
add License.md

#34 Fontanapink closed 7 months ago
1
make Codecov coverage test

#33 Fontanapink opened 9 months ago
0
make PyTests for this project

#32 Fontanapink opened 9 months ago
0
make tags for different release versions

#31 Fontanapink opened 9 months ago
0
Update pull request template and add FIXMEs and bug reporting

#30 Fontanapink closed 9 months ago
0
where is this defined?

#29 Fontanapink closed 6 months ago
1
where is this defined?

#28 Fontanapink closed 6 months ago
1
is this `cRidge` defined anywhere? or is it `Ridge`?

#27 Fontanapink opened 9 months ago
0
generate_data_perts is not defined anywhere

#26 Fontanapink closed 7 months ago
2
generate_params is not defined anywhere

#25 Fontanapink closed 7 months ago
2
Cb12 14

#24 cpbarnes closed 9 months ago
0