vdemichev DiaNN issues - Githubissues

vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

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first search much higher with 1.9.2 and MBR using speclib prediction with supplied library

#1281 jessegmeyerlab opened 1 hour ago
0
Should CAMthiopropanoyl-Modification Be Set as a Dynamic or Static Modification?

#1280 95dari closed 10 hours ago
4
the two-species spectral library

#1279 lzw150 opened 2 days ago
1
How to increase processing speed for phosphoproteomics data in DIA-NN?

#1278 demhibou opened 3 days ago
1
Some questions about DIA-NN output

#1277 wumingxiaocuier opened 3 days ago
4
DiaNN output problem

#1276 Baopusr opened 3 days ago
1
Fixed Modification configuration

#1274 franklyn7890 opened 4 days ago
1
Issues recreating the automatically generated report.pg_matrix (unsure of filters used)

#1273 ore-sol opened 5 days ago
1
dimethyl plexDIA

#1270 cutleraging opened 1 week ago
10
dia-nn uses 12 cores only out of the 76 available

#1269 GeorgeCMarinescu opened 1 week ago
4
Spectral Library Generation with DIA-NN for Human and Bovine Blood Samples

#1268 Mnago opened 1 week ago
2
How to handle when protein groups id contains semicolons

#1267 Gambrian closed 6 days ago
2
Failed after generating precursor levels matrix

#1266 yashacode opened 1 week ago
4
MBR and smart profiling

#1263 xiaosiruwei opened 1 week ago
1
Inconsistent PG Q-value for multiple precursors of the same run and PG

#1262 hollenstein opened 1 week ago
4
issue with xic parquet path in linux version

#1260 heejongkim opened 1 week ago
6
It didn't generate a .speclib format file for Skyline

#1258 Yx556 opened 2 weeks ago
2
WARNING: only in silico predicted libraries should be loaded in the .speclib format;

#1256 li20041 closed 2 weeks ago
2
Wrong DiaNN Version in README

#1254 hollenstein closed 1 week ago
2
Processing data with heavy labelled proteins and/or peptides

#1253 SStoychev01 opened 2 weeks ago
3
diann stop working (1.9.2)

#1251 Kokoushin closed 1 week ago
5
DIANN 1.9.2 - Single pass and double pass NN give exact same results

#1250 rodvrees opened 2 weeks ago
3
Modified peptide quantification

#1249 zoe1985 opened 2 weeks ago
1
Questions regarding lactylation modifications in DIANN version 1.9.1 windows

#1248 ZHBHSMILE opened 2 weeks ago
4
Reading. quant failed

#1245 xiaosiruwei opened 2 weeks ago
1
Is it possible to execute multiple instances of DIANN 1.9.1 simultaneously on Linux?

#1243 zplv686 opened 3 weeks ago
1
DIANN1.9 and 1.9.1

#1242 naiyoubuding opened 3 weeks ago
1
Spectral library generation difference between 1.91 and 1.9.2

#1241 3399R closed 3 weeks ago
2
Why generate an in silico-predicted library in the first place?

#1238 FDelalande opened 3 weeks ago
1
From fragment.Quant.Raw to Precursor.Quantity

#1237 FDelalande opened 3 weeks ago
3
Insufficient system memory or apptainer/singularity platform

#1236 hosseinvk closed 3 weeks ago
2
Producing predicted library from a tsv file

#1235 yangkl96 opened 3 weeks ago
1
same peptide seq but different STY localization probability of same Serine amino acid

#1234 singhsk2622 opened 3 weeks ago
6
the output file is empty

#1233 oogene opened 3 weeks ago
1
Unknown Loss and Tracing Fragment Ions

#1232 laurenfields opened 3 weeks ago
3
Proteins.Identified == 0 in stats.tsv and pdf (1.9.2)

#1231 Kokoushin closed 3 weeks ago
4
match between run diabled

#1229 Li5459000 closed 3 weeks ago
1
Difference in protein number in sample when same raw file is searched again with other raw files DIANN 1.9.1

#1228 SMurphy368 opened 1 month ago
4
Speclib format

#1227 heejongkim opened 1 month ago
7
Exiting after loading spectral library

#1226 JovanyBetancourt opened 1 month ago
2
How to use Protein.ids in downstream analysis

#1224 Gambrian opened 1 month ago
22
License clarification, meaning of "Use in the cloud"

#1222 mriffle closed 1 month ago
2
No proteins or peptides assigned

#1221 Bidoof11 opened 1 month ago
1
Phospho Predicted Library with Invalid/Unspecified Fragment Charge States (v1.9.2)

#1220 singjc closed 1 month ago
4
Evidence column meaning

#1219 ds2268 opened 1 month ago
1
Premature exit

#1218 cutleraging opened 1 month ago
6
Annotate proteins for spectronaut TSV library

#1217 patrick-willems closed 1 month ago
7
generating library from DDA search

#1216 animesh opened 1 month ago
2
Custom spectral library from skyline

#1214 cutleraging opened 1 month ago
3
Out of memermoy while dealing Cohort Data

#1211 huangcx1539 opened 1 month ago
6