issues
search
vpc-ccg
/
pamir
Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals
BSD 3-Clause "New" or "Revised" License
8
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Segmenation fault
#55
wcarre
opened
3 years ago
0
negative tlen_min
#54
1dayac
opened
3 years ago
0
check if mrsfast index exists
#53
Krannich479
opened
4 years ago
0
Update readme about running on cluster
#52
f0t1h
opened
4 years ago
0
Parameterize min and max cluster size
#51
f0t1h
opened
4 years ago
0
Pamir hanging at mrsfast_anchor_wg_map
#50
Krannich479
closed
4 years ago
2
Hanging in rule pamir_assemble_full_new:
#49
christinafliege
opened
4 years ago
20
optimize computer usage
#48
christinafliege
opened
4 years ago
5
relative paths are broken
#47
Krannich479
closed
4 years ago
0
Pamir.sh requiring centromer parameter is inconsistent with README
#46
Krannich479
closed
4 years ago
3
Warn and terminate if config is not provided
#45
f0t1h
closed
4 years ago
1
Error in rule sam_sort:
#44
christinafliege
closed
4 years ago
40
Change to abs path.
#43
fhach
closed
4 years ago
0
InputFunctionException
#40
christinafliege
closed
4 years ago
20
updated number of cores of Repeatmasker + updated cluster.json. + added slurm checker options
#39
mortunco
closed
4 years ago
0
updated environment.yaml + added minia conda
#38
mortunco
closed
4 years ago
0
Bug fix due to packing/unpacking in filtering
#37
mortunco
closed
4 years ago
0
Bug fix unpack/pack bug on filtering.py
#36
mortunco
closed
4 years ago
0
2.0
#35
fhach
closed
4 years ago
1
Bug fix for parsing blastdb output.
#34
mortunco
closed
4 years ago
0
added rawdata stats + vis
#33
mortunco
closed
4 years ago
0
Update README.md
#32
mortunco
closed
4 years ago
0
Moved from another issue.
#31
fhach
closed
4 years ago
0
Make sub-commands
#30
fhach
closed
4 years ago
0
Duplicate Code removal
#29
fhach
closed
4 years ago
0
fixes for visualisation
#28
mortunco
closed
4 years ago
0
Edited small-example on README.md
#27
mortunco
closed
4 years ago
0
improvements data.js minimization + wiki
#26
mortunco
closed
4 years ago
0
updated README.md
#25
mortunco
closed
4 years ago
0
Class attribute error during multi-sample run
#24
Krannich479
closed
4 years ago
1
2.0
#23
mortunco
closed
4 years ago
0
improved vis
#22
mortunco
closed
4 years ago
0
Wrong location
#21
fhach
closed
4 years ago
0
proper output message
#20
fhach
closed
4 years ago
1
Faraz's Edits after Calkan meeting
#19
mortunco
closed
4 years ago
0
2.0
#18
mortunco
closed
4 years ago
0
2.0
#17
mortunco
closed
4 years ago
0
Caught up with the main repo
#16
mortunco
closed
4 years ago
0
2.0
#15
mortunco
closed
4 years ago
0
2.0
#14
mortunco
closed
4 years ago
0
added settings for rule cluster.json + changed 64 cores to 62 to allo…
#13
mortunco
closed
4 years ago
0
samtools and velvet threads
#12
calkan
closed
4 years ago
2
discordants.fastq and mrsfast.best.sam
#11
calkan
closed
4 years ago
0
samtools sort
#10
calkan
closed
4 years ago
0
mrsfast mapping min/max
#9
calkan
closed
4 years ago
1
update samtools command line
#8
calkan
closed
4 years ago
1
provide CRAM support
#7
calkan
closed
4 years ago
1
Invalid Samtools Sort Command
#6
charliecurnin
closed
4 years ago
12
Cannot Execute Binary
#5
charliecurnin
closed
6 years ago
14
Investigate Specific Sites Only
#4
charliecurnin
closed
6 years ago
1
Next