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zhanghao-njmu
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SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
https://zhanghao-njmu.github.io/SCP/
GNU General Public License v3.0
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Some mistakes in RunCellQC function
#255
YongjieWangSarcoma
opened
5 days ago
0
a warning for SCP calling ggplot2 version > 3.4.X
#254
Shiywa
opened
1 week ago
0
Installing the toolkit on a public server is quite difficult. Is there a packaged Docker version available?
#253
baconchan
opened
2 weeks ago
0
Error with RunCellQC with seuratV5 object
#252
Kiliankleemann
opened
3 weeks ago
2
Volcano plot
#251
yshs01
opened
3 weeks ago
0
RStudio crashed when executing RunPAGA() function
#250
whiteSongLin
opened
4 weeks ago
0
The plot size of the FeatureHeatmap function is incorrect.
#249
UnseenAnchor
closed
1 month ago
1
Heatmap - selective row labeling even when show_row_names set to FALSE
#248
bapoorva
closed
1 month ago
1
Heatmap
#247
Morriseylab
closed
1 month ago
0
error in "RunKNNPredict" and "CellCorHeatmap"
#246
CCCBBG
opened
2 months ago
0
How to customize the order of groups within the FeatureStatPlot function
#245
jphe
opened
2 months ago
3
error in calculate trajectory
#244
rdf1993
opened
2 months ago
0
Negative P-Values RunDynamicFeatures()
#243
imev2023
opened
2 months ago
0
Problems with the RunSlingshot() function
#242
leo971001
opened
2 months ago
4
how to use Runharmony function in SCP ?
#241
fangzhoufan
closed
3 months ago
0
Update violin plots inside GroupHeatmap
#240
EhsanRS
opened
3 months ago
0
Spelling mistake in the GSEAPlot
#239
PietroD
opened
3 months ago
0
DynamicHeatmap issue
#238
wangtanzhang612
opened
4 months ago
3
Slingshot Warning
#237
wangtanzhang612
closed
4 months ago
5
Issue on installation: object ‘LayerData<-’ is not exported by 'namespace:SeuratObject'
#236
xiaodiYan
opened
4 months ago
9
The angle parameter doesn't work in the theme function
#235
Sophia409
opened
4 months ago
1
how to reduce run time for RunDynamicFeatures
#234
nbutyrate
opened
4 months ago
0
Why is the number of DEGs output by FeatureHeatmap largely lower than that obtained from RunDEtest?
#233
Sophia409
opened
4 months ago
1
一点点小建议
#232
schnappi-wkl
opened
5 months ago
0
Error in CellCorHeatmap()
#231
redtorrentCN
opened
6 months ago
0
Upgrade to work with Seurat5?
#230
sebastiangornik
opened
6 months ago
0
关于Seurat版本更新后的使用问题
#229
kikokhalifa
opened
7 months ago
2
miniconda installation failed [exit code 2]
#228
Organacids
closed
5 months ago
2
Question about several functions in SCP
#227
Cathearty
opened
8 months ago
1
Obtain associated p values for CellCorHeatmap
#226
ChristinaSteyn
opened
8 months ago
0
problem RunPAGA
#225
JoelHaas
opened
8 months ago
1
Package conflicts with dependencies
#224
ayyildizd
opened
8 months ago
1
Error in t.default(srt@assays[[assay]]@data[intersect(cell_annotation, : 参数不是矩阵
#223
schnappi-wkl
closed
8 months ago
1
版本更新问题
#222
Portulaca666
opened
8 months ago
3
RunDEtest and FeatureHeatmap-enrichment take too long on my own dataset and can't run
#221
browningChen
closed
7 months ago
2
Error: Cannot create zero-length unit vector ("unit" subsetting) (ht <- DynamicHeatmap)
#220
31474molly
opened
8 months ago
0
Error: 'keyword_enrichment_from_GO' is not an exported object from 'namespace:simplifyEnrichment'
#219
Jzwing
closed
8 months ago
1
library(SCP) Error: package or namespace load failed for ‘SCP’: object ‘LayerData<-’ is not exported by 'namespace:SeuratObject'
#218
Jzwing
closed
8 months ago
2
There are two types of gene names and some gene names are missing when I use 'GroupHeatmap’
#216
wyr997-323
closed
8 months ago
1
Get errors when retrieving information from the BioMart database
#215
ZyRose1
opened
8 months ago
1
Error: Cannot find assay 'SCT' in this Seurat object ?
#214
xflicsu
opened
8 months ago
0
error in RunCellQC
#213
yangtao38324
opened
9 months ago
1
GSEA error
#212
rdf1993
opened
9 months ago
2
Update reexports
#211
zhanghao-njmu
closed
9 months ago
0
Update examples for CellDimPlot function
#210
zhanghao-njmu
closed
9 months ago
0
Increment version number to 0.5.6
#209
zhanghao-njmu
closed
9 months ago
0
Develop
#208
zhanghao-njmu
closed
9 months ago
0
RunDynamicFeatures runtime
#207
france-hub
opened
9 months ago
1
Error:SCP::RunCellQC(srt = pancreas_sub)
#206
Crorazon
opened
9 months ago
2
RunKNNPredict bug
#205
zhangzhiguo-hub
opened
9 months ago
0
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