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10XGenomics
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cellranger
10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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Bump certifi from 14.05.14 to 2022.12.7 in /lib/python/fbpca/docs
#196
dependabot[bot]
closed
9 months ago
1
cellranger aggr is unable to combine cellranger multi output
#195
dmalzl
closed
1 year ago
2
urgent: cellranger-arc questions
#194
jiangzh-coder
closed
8 months ago
2
ATAC- Cell Ranger ARC
#193
jiangzh-coder
closed
8 months ago
1
Theory of infer multiplets
#192
Bio-MingChen
closed
8 months ago
0
ArchR vs Signac for calculating number of fragments per sample (nFrags)
#191
tangybat
closed
8 months ago
0
CellRanger Stage Memory Issue
#190
1onic
closed
8 months ago
2
ArchR vs Signac for calculating number of fragments per sample (nFrags)
#189
tangybat
closed
8 months ago
0
Generating alerts.json in the count pipeline
#188
jeramand
closed
1 year ago
2
CellRanger count include-introns
#187
kikegoni
closed
8 months ago
0
Cellranger count issue
#186
ojhdavid
closed
1 year ago
0
Bump lz4-sys from 1.7.5 to 1.9.4 in /lib/rust/vdj_asm
#185
dependabot[bot]
closed
1 year ago
1
mkref probelm
#184
AnnaAntonatouPap
closed
8 months ago
0
low Reads Mapped Confidently to Transcriptome?
#183
dm8000
closed
1 year ago
1
cellranger aggr combined two files' data?
#182
aryan-dugar2
closed
1 year ago
1
bash: cellranger: command not found
#181
dm8000
closed
1 year ago
2
cellranger-arc gtf file requirments
#180
thugib
closed
8 months ago
0
cellranger process single-end scRNAseq
#179
BenxiaHu
closed
2 years ago
1
Refactoring code for better vectorization
#178
maldil
closed
8 months ago
0
UMI counting bug when reads duplicated
#177
ShuyangXu
closed
8 months ago
4
Bump numpy from 1.9.1 to 1.22.0 in /lib/python/fbpca
#176
dependabot[bot]
closed
9 months ago
1
Bump numpy from 1.9.1 to 1.22.0 in /lib/python/fbpca/docs
#175
dependabot[bot]
closed
9 months ago
1
Bump numpy from 1.9.1 to 1.21.0 in /lib/python/fbpca/docs
#174
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.9.1 to 1.21.0 in /lib/python/fbpca
#173
dependabot[bot]
closed
2 years ago
1
Bump crossbeam from 0.4.1 to 0.8.1 in /lib/rust
#172
dependabot[bot]
closed
9 months ago
1
Bump ordered-float from 0.5.0 to 1.1.1 in /lib/rust/vdj_asm
#171
dependabot[bot]
closed
9 months ago
1
Bump smallvec from 0.4.1 to 1.8.0 in /lib/rust/vdj_asm
#170
dependabot[bot]
closed
1 year ago
1
Bump smallvec from 0.6.3 to 0.6.14 in /lib/rust
#169
dependabot[bot]
closed
9 months ago
1
Bump linked-hash-map from 0.5.0 to 0.5.4 in /lib/rust/vdj_asm
#168
dependabot[bot]
closed
9 months ago
1
Unable to auto-detect chemistry.
#167
fjptwenger
closed
8 months ago
2
Running cellranger-arc count on one lane of a well
#166
Alkhawaja95
closed
8 months ago
0
Incorrect gex_umis_count and gex_genes_count reporting in per_barcode_metrics.csv file
#165
kwcurrin
closed
2 years ago
2
Error in cellranger-arc online algorithms overview regarding duplicate removal
#164
kwcurrin
closed
8 months ago
0
Cellranger mkref can not passed to STAR
#163
YuriPPAN
closed
8 months ago
0
allow underscores instead of spaces
#162
plijnzaad
closed
8 months ago
0
table headers for cellranger ... --feature-ref=table.csv are case-sensitive
#161
plijnzaad
closed
8 months ago
0
The number of read1 and read2 is inconsistent
#160
yingHH
closed
8 months ago
0
--chemistry=ARC-v1 missing from cellranger --help
#159
plijnzaad
closed
8 months ago
0
cellranger count error
#158
JYsea
closed
2 years ago
1
Remove PCR duplicates from gene expression BAM files
#157
plbngl
closed
8 months ago
0
cellranger vdj run error
#156
yanpinlu
closed
8 months ago
1
Feature MEX file output incorrect
#155
lmogil
closed
8 months ago
4
Is gex_possorted_bam.bam deduplicated ?
#154
plbngl
closed
8 months ago
1
Filtering out unspliced UMIs
#153
Chhiring-Lama
closed
8 months ago
1
unmatched symbol and ensembl_id in features.tsv.gz output file using official refdata-gex-GRCh38-2020-A
#152
MingwuDuan
closed
8 months ago
0
counting intronic reads with --include-introns
#151
binyaminZ
closed
8 months ago
0
'multi' barcode mismatch issue
#150
bnpapas
closed
8 months ago
0
Cellranger aggr missing TCR/BCR output folders
#149
mbartl13
closed
8 months ago
0
"Reference contains a contig longer than 536.8Mb (2^29 bp),Please split this contig."
#148
mihuzx
closed
8 months ago
3
cellranger count error: segmentation fault (core dumped)
#147
chocokuma
closed
2 years ago
2
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