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10XGenomics
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cellranger
10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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Circular chromosomes?
#146
pjlmac
closed
8 months ago
1
1000-separating comma's inside outs/metrics_summary.csv
#145
plijnzaad
closed
8 months ago
3
cellranger testrun --id=tiny show KeyError: 'pca'
#144
levinit
closed
2 years ago
2
Does cellranger support analyzing sequences obtained from other companies?
#143
rocketeer1998
closed
2 years ago
1
cellranger-arc. error with error] The peak caller called peak(s) spanning 98.24% of the genome. This could be caused by excessive background transposition or is a failure in peak calling
#142
forrwill
closed
2 years ago
3
Intercepting non optical duplicate from BAM file
#141
castaway1990
closed
2 years ago
2
Rerun `cellranger multi` with different parameters without having to rerun the full alignment ?
#140
plijnzaad
closed
2 years ago
1
Cellranger count error:Your reference doesn't appear to be indexed. Please run the mkreference tool
#139
debbie28
closed
8 months ago
6
Similar Clones between samples
#138
nonesuch1936
closed
2 years ago
0
Usage of multiple h5 files to create Seurat object
#137
kaanokay
closed
2 years ago
2
dnase peaks information
#136
rtyags
closed
8 months ago
1
warning in running prefilight checks: problem fetching io
#135
juneE-cloud
closed
2 years ago
6
better error message than "Formatting error in sample sheet"
#134
slowkow
closed
8 months ago
1
cellranger-arc mkref error with ensembl gtf
#133
rtyags
closed
8 months ago
6
How long does mkref run?
#132
rtyags
closed
2 years ago
1
[error] Your reference doesn't appear to be indexed. Please run the mkref tool.
#131
lwtan90
closed
2 years ago
3
Cellranger count: Found two feature definitions with the same ID
#130
capsellabursa
closed
2 years ago
3
Differences in feature and UMI per cell counts between versions
#129
pavsol
closed
2 years ago
1
Count indexed reference error
#128
WesDe
closed
3 years ago
0
Param CSV file construction for cellranger reanalyze pipeline
#127
Ankita-1211
closed
3 years ago
4
6.0.1 mkref error, similar to closed issue #125
#126
ArielPaulson
closed
2 years ago
1
mkref error
#125
pavsol
closed
3 years ago
5
cellranger count How to modify the output path
#124
yanglq-bio
closed
3 years ago
3
Bump pygments from 2.0.1 to 2.7.4 in /lib/python/fbpca/docs
#123
dependabot[bot]
closed
2 years ago
1
Bump pygments from 2.0.1 to 2.7.4 in /lib/python/fbpca
#122
dependabot[bot]
closed
2 years ago
1
Bump pyyaml from 3.11 to 5.4 in /lib/python/fbpca/docs
#121
dependabot[bot]
closed
2 years ago
1
Bump pyyaml from 3.11 to 5.4 in /lib/python/fbpca
#120
dependabot[bot]
closed
2 years ago
1
expect-cells
#119
BenxiaHu
closed
2 years ago
1
running cellranger count for one sample on a common directory
#118
mmfalco
closed
3 years ago
1
Bump jinja2 from 2.7.3 to 2.11.3 in /lib/python/fbpca
#117
dependabot[bot]
closed
2 years ago
1
Bump jinja2 from 2.7.3 to 2.11.3 in /lib/python/fbpca/docs
#116
dependabot[bot]
closed
2 years ago
1
default no of mismatches allowed in cell ranger
#115
shabs24
closed
8 months ago
0
Pipestance failed
#114
yuyingxie
closed
3 years ago
4
cellranger count: ERROR : --transcriptome NO such file or directory
#113
MubasherMohammed
closed
3 years ago
1
Reproducing filtered cells with emptyDrops
#112
HuynhNPT
closed
3 years ago
1
Edit loupe files
#111
brianpenghe
closed
3 years ago
2
about rna_read_offset of CHEMISTRY_SC5P_PE in chemistry.py
#110
MengweiLi-project
closed
8 months ago
1
why don't you use hisat2 for mapping?
#109
chansigit
closed
8 months ago
0
high variable genes
#108
wangjiawen2013
closed
3 years ago
1
cellranger (v5.0) mkref --nthreads=16 is not passed onto STAR command
#107
riyuebao
closed
3 years ago
11
a piece of information about AGGR
#106
tanasa
closed
3 years ago
2
unknown error when running 'testrun' with CellRanger
#105
mengm5
closed
3 years ago
1
Cellranger5.0.0 mkref do not generate genes.pickle file (and repertory)
#104
newbieMars
closed
3 years ago
2
An extremely low rate of correct barcodes was observed
#103
leeyoyohku
closed
3 years ago
1
StageException: Could not QC barcodes: return code -9
#102
amirshams84
closed
3 years ago
1
Bump jinja2 from 2.7.3 to 2.10.1 in /lib/python/fbpca
#101
dependabot[bot]
closed
3 years ago
1
Bump jinja2 from 2.7.3 to 2.10.1 in /lib/python/fbpca/docs
#100
dependabot[bot]
closed
3 years ago
1
Update License
#99
evolvedmicrobe
closed
3 years ago
0
How to add my own barcode whitelist?
#98
listen2099
closed
3 years ago
2
Loupeserver encountered an error
#97
RyanYip-Kat
closed
3 years ago
1
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