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### Description of bug
Hi!
I am assembly soil samples, there has some samples , i try to set different params for example different memory or threads, but still not solving.
best,
wanli
### s…
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Hello!
I run:
**reckoner -genome 4500000000 -prefix ${p} -threads 128 -kmcmemory 900 -longkmer -verbose -reuse ${r1} ${r2}** …
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I have an RNA seq that I need to assemble from PacBio and when I send the script the program do not pass the stage 2. I work with PACbio long read Hifi sequence that end up being all around 12 mil…
A-pcd updated
3 weeks ago
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### Description of bug
Hi, I am assembling my sequencing data on a cluster but this step takes me more than 12 hours. Is there any problem with it?
### spades.log
[spades.log](https://github.com/ab…
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Hi,
I have met with another ignoring error, here is the log:
0.982908 k-mers per position
14994 DB matches per sequence
8 overflows
0 queries produce too many hits (truncated result)
58 sequen…
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I am trying to run a `foldseek easy-search` job with the UniProt database built from `foldseek databases Alphafold/UniProt`. With two different attempts on different machines (with up to 256GB memory)…
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Hi Team,
I am working on a project wherein I have to count k-mers from genome assemblies. I, therefore, have to run this across multiple files. As per the documentation (txt: A plain text file with…
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### Description of bug
I tried to assemble metagenome reads via SPAdes (--meta), yet only the first k-mer can be assembled successfully without other manipulations. During the second k-mer assembly…
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Currently workflow does k-mer counting on the individual fastqs from each bam, but then goes on to combine the fastq. Should k-mer counting be performed on the combined fastq or the parts?
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I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …