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Hello,
Firstly, thank you for this tool.
I am working on amplicon sequence data and my workflow involves generating GVCFs with Clair3 with gvcf enabled which I then use as inputs for the CombineGVC…
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- [x] AIRR
- [x] IEDB
- [x] VDJBase
- [x] OGRDB
- [x] IRAD
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I'm having trouble finding an example of methods to extract stats like allele frequencies from individual subpopulations. Using:
```
[simu.dvars(subPop=[1]).alleleFreq[0][1]]
```
Generates an erro…
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```R
library(gwasrapidd)
child_traits
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* **Do you want to request a *feature* or report a *bug*?**
*feature*
* **What is the expected behavior?**
The VCF preprocessor will print out specific warning messages.
e.g.
- [x] Geno…
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Hi all,
a quick question about supported/expected filtering logic, especially for ontology terms:
Reading the [documentation](https://github.com/ga4gh-beacon/beacon-v2/blob/main/docs/filters.md) …
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* Identify and document the annotations we'll launch with for December.
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Is VRS the right format to include variant annotation data (e.g. ClinVar annotation)? Otherwise, which GA4GH format should be used for this purpose? Also, is it possible to describe multiple variants …
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Hi Yunye,
There is a gwaslab enhancement suggestions:
Recently I was doing some co-localization analysis, which required MAF allele frequency. But unfortunately, many studies didn't provide it.
…