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### Here's the overview of the plan:
There are very few papers that look into synteny of non-bilaterians. The ones that have take a manual approach to synteny analysis, looking only at one or two 'ta…
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Hello!
I'm new in the field and I need to use Chewbbaca In the end of the analysis, I get in a visualization folder, a file, cgMLST.tsv. Is the values in this file represent the allele distance of e…
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Hi there,
I really like this concept. However, I am trying to make sense of my results. After plotting PC1 and PC2 for Ceratocystis fimbriata proteome. I observed clustering with very un expected …
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I am using funannotate 1.8.9 version installed with conda (mamba).
"funannotate compare -i Genome_one.gbk Genome_two.gbk Genome_three.gbk -o compare --cpus 4 --outgroup botrytis_cinerea.dikarya
--…
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run peakachu pool after a score function, but receive a numpy error:
commands:
peakachu score_genome -r 10000 -m CTCF-ChIAPET-peakachu-pretrained.10million.10kb.pkl -p ChIA-PET_mm10_10000.hic.cool…
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Hello,
After collecting a test set of fragCounter coverage profiles for 4 normal samples, I attempted to run the `dryclean` workflow.
I encountered the following error while trying the first step …
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It would be really nice to be able to restart ipyrad from the middle of a step rather than having to restart the entire step.
This is probably most important on Step 3. For example, I was running i…
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Hello everyone.
I am trying to run the script on 14 different junc files, constructed using regtools with no errors (using the option -s 1).
the error is:
NC_000022.11:+..NT_187689.1:-..NW_003315…
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...takes too long to complete and fails.
1. Put a limit on the input for clustering and show a clear message to the user.
2. See if we can deploy clustering on better machine.
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This is related to #232 I was getting on my laptop - the `"Bio.Alphabet has been removed from Biopython` error. You had suggested trying version `2.2.8` so I'm pulling the latest master from github to…