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I have used this function before on a mac and I had no issues, but when using windows I can't get the function to work. I am not sure if it has to do with the fact that I am using windows, but I am at…
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Hi, may you please help provide a detailed way to use Cacoa on a seurat object?
I am getting errors I am not sure the reason of, e.g
when running "cao$estimateCellLoadings()"
I get:
"Error in h(…
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https://mp.weixin.qq.com/s/YJKeJlw-O_TYVhF1qSXaFg
ixxmu updated
9 months ago
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From https://github.com/LieberInstitute/DLPFC_snRNAseq/search?q=module+load+conda_R I see lots of `module load conda_R` which are not explicit and rely on the default version (right now it's `4.1.x`).…
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This means adding the cell counts for each cell type to each SPE object (the versions that will be uploaded to shiny + #76). This could be done directly on the `app.R` scripts (if so, update the `depl…
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Dear scCODA team,
I have been using scCODA in my snRNAseq data to find out differentially distributed celltypes. I have read most of the documentation but given I am not a mathematician (or related…
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https://mp.weixin.qq.com/s/YdrjyjTjp7Hm8tzbgul26A
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Hi,
I would like to have some help: I'm running CellBender on a "problematic" sample (trial of new nuclei isolation protocol , resulted in lower quality). We know that many cells need to be discard…
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Hello! Thank you for your great work on this package. I found it very easy to use and your documentation is excellent. I have a question regarding the data availability from your paper.
In your pape…
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Hi, I am reading the paper and find it a very informative manuscript.
I was wondering if I can check the code on how exactly the cell cycle score was calculated.