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I was running DEnrichRPlot using my SCT assay after the PrepSCTFindMarkers. The data didn't quite make sense, so I reran it under the "RNA" assay. The data was drastically different (honestly made mor…
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Hi,
Could please you add the RNA families to the JSON files?
This would be a helpful information to split a validation set.
Thanks in advance!
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Hi,When I was running this function, I encountered the following error, I checked my motif matrix and gene name, but I did not find a number beginning, I feel very confused, can you give me the answer…
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I had multiple seurat objects and I wrote each to disk then merged them. How to save this object ? Do I just saveRDS()? or do I write it into a matrix first?
write_matrix_dir(mat = object1[["RNA"]]…
Flu09 updated
2 months ago
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速度很快的工作,很强。核酸的预测是很重要的问题,我也是关注者之一。HelixFold3提供了开源可用的工具,同时大幅度超越了RF2NA和RFAA,确实很棒。我有如下问题:
1. 想问一下CASP15的RNA测试的过程中,HelixFold3推理了几次?
2. HelixFold3如何做的ranking?对RF2NA和RFAA,有多次采样重新排序么?
3. AF3的指标是来源于AF3 serv…
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Does TElocal work with long read bulk RNA-seq? If so, has anyone done this, and, are there any reccomrecommendations on how to run it?
Thank you,
FR
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This would be similar to `cellxgene_census.get_anndata` and reduce the amount of code users have to write.
**Current**
```
human = census["census_data"]["homo_sapiens"]
query = human.axis_query(…
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![image](https://github.com/user-attachments/assets/2e6a6bca-6cb5-4f8e-9f38-22ea786a6d47) Hi, hope you are doing great!, could you please help me with this? whats going on?¿? a few months ago bakta wo…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [x] (option…
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Thanks a lot.
I am learning seurat v5.
```
rm(list = ls())
library(Seurat)
library(SeuratData)
library(SeuratWrappers)
library(Azimuth)
library(ggplot2)
library(patchwork)
options(future.g…