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Hi Dr. Shujun,
EDTA is a very good software！
Recently, I also encountered a problem when annotating TE sequences in the IWGSCv1p1A.fa genome with EDTA. The error message is as follows: No SINE res…
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Hi all,
Does anyone know which output file is the list of hallmark genes in each contig?
Best,
Yuya
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Hi all,
I am running STAR-Fusion with all filters removed from a docker container on a single chimeric.out.junction file with this command:
```
docker run -v $(pwd):$(pwd) \
-v ${ctat_lib_di…
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Suppose I'm trying to obtain annotation data for Plasmodium vivax (GCF_000002415.2). If I download data from NCBI datasets and do a simple grep on sequence headers, I get this:
```
>NC_009906.1 Plas…
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I'm testing the latest version, and it's increasingly more obvious to me that we'll need to restructure the CLI. Currently it's confusing, and likely not permanent.
Specifically, we need a good str…
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Hello sir,
Long time fan and user of Flye, Abruijn, etc.
I have three datasets:
- PacBio HiFi
- 90-95% accurate ultra-long ONT
- Hi-C
I know there are other assemblers that may out-perform…
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Hi,
Thank you for developing a great tool! Does the tool only take unaligned reads from cellranger's output?
I ran `cellranger count` on my files with a custom reference containing the human r…
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Hello there!
I am running diversity on bam files to determine the diversity across the whole genome (--window-type genome) and expected the columns to add up to the total number of positions on my …
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### Description of feature
Dear Developers,
Can you please point me to the documentation that describes how to run the Genome Quantification using the pipeline,
Best,
Nico