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I would like to ask how Trust4 can directly analyze paired-end .fastq format data from the 10X Genomics platform for single-cell analysis, instead of analyzing BAM format data. Can you provide support…
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From Beth:
I have been thinking about how to cater the current GWAS for Anvil. Here are my thoughts:
Currently, biggest difference between these GWAS tutorials we are creating is how to navigate the…
kozbo updated
3 years ago
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Hi thanks for developing this tool for m6A modification. Maybe I missed it, but I was wondering how to generate this bed file for my own data analysis? Am I supposed to make the bed file for each quer…
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Expand to show genome assembly overview if analysis represents a genome assembly.
[LEGUME-704] created by ecannon
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I am performing roary pangenome analysis on hp genomes and I got several annotations for the same gene in the individual genomes. For instance vacA which typically has a single copy in all genomes has…
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Hello, I am trying run your pipeline on single cell analysis, i have genome C57(maternal)* CAST(Paternal) and CAST(maternal) * C57(paternal) in this case how to use the command python3 python3/pre…
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### Description of the bug
When providing several samples that should be mapped to different genomes in a samplesheet, the pairing between sample (group) and genome is ignored.
Expected behaviour…
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I have around 300 phage genomes. and I wish to check the spacers in these many genomes. what should be the command line to execute the analysis.
**python CL_Interface.py -i TestGenomes/KJ489400.fas…
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Hi. I am trying to format my seg file to run CNV analysis on chromosome X. I've tried leaving the "chromosome" column notation as "X" and converted "X" to 23, however both attempts were unsuccessful w…
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**Describe the bug**
Dear bamtocov team,
I have human WES data and am trying to run bamtocov. After 6 hours, not even half is done/calculated, even when using 24 threads. Maybe I am missing somet…