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**Is your feature request related to a problem? Please describe.**
The recHist slot/property of the SimParam class is not documented/described, it seems.
**Describe the solution you'd like**
This…
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### Description of feature
When I want to save the heatmap with `infercnv.pl.chromosome_heatmap`, I noticed about I can't not specify the position to save the heatmap. May be the `save` parameter ca…
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In our initial use case, we have the comfort of a deterministic mapping between chromosomes and actual VCF files, i.e. `chr4` always exists only on a specific file named in a GREGoR data table.
I'm…
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We are now working on Nanoseq in a monkey. Human and mouse chromosomes usually start with N. But, in this monkey, some chromosomes start with ATGC. When sequence reads are mapped to the end of such ch…
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Unexpected error: Cannot invok
"org.broad.igv.feature.Cromosome.getLength(）" because "Chr" is null
See igv.log for more details
igv.log
[LongRunningTask] Exception running task
SEVERE [11月 13,2…
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### Contact Details
_No response_
### Scripts
01-check_data.sh
### What happened?
We don't genotyped data on sex chromosomes and the probes on sex chromosomes were excluded in previous QC steps. …
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Hi!!
I'm curated a genome with PretextView. I organized the map and tagged some unlocs with the M option and finally tagged the chromosomes with S mode. When I export the map to agp, a map.pretext.…
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### In which category is your new term request?
- [ ] new_definition
- [X] existing_definition
### Preferred term label
chromosome
### Synonyms
N/A
### Textual definition
a part of the karyotyp…
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Hi,
What is the general performance expectation for highly polygenic GWAS, with hundreds of GWAS-sig loci?
I am running GCTA-COJO conditional analysis on a case:control GWAS with hundreds of loc…
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Hi @gbouras13,
Thanks for your wonderful tool. I noted that there were two choromosome contigs in more than one 'chromosome.fasta' files following hybrid assembly. I included the `--keep_chromosom…