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Hello,
I notice that the simulations and various empirical examples you have run for TWISST all use multiple samples per designated taxon.
My question is simple: Is there reason to think TWISST…
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I'm submitting a bunch of genomes to NCBI and they want genome coverage:
>The estimated base coverage across the genome, eg 12x. This can be calculated by dividing the number of bases sequenced by…
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Hi, I still need to go through the details. I just installed and started the Test run. We have sequenced and assembled some ciliate genomes that have never been reported. I am a newbie in the field of…
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Dear Unicycler team,
I chose Unicycler to assemble _de novo_ bacterial genomes with ONT sequences, because I tried with several ones and Unicycler gived me better results.
However I start to obser…
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Not sure if the load function currently handles this or if it would need to be added. This way it would be possible to use gemini to maintain a database of locally sequenced exomes/genomes. Useful for…
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## Ag1000G phase 1 AR2 data release
Dataset link: https://www.malariagen.net/data/ag1000g-phase1-AR2
Region: Africa
Taxon: Mosquitoes
Bibliographic reference: The Anopheles gambiae 1000 Ge…
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First off - thanks for this tool!
i ran the workflow on the test dataset with no problems, but I've been trying to test it on some genomes we sequenced, and am getting an error at the interval findin…
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What are empirically good values for `l` and `k` when generating a custom database which is going to be used for Oxford Nanopore data?
Anyone some hints here? Would you stick to the default? I am a…
ms-gx updated
2 months ago
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This issue can serve as a placeholder for use cases for sourmash/MinHash more generally.
Stuff we already have implemented:
* basic MinHash comparisons etc
* metagenome taxonomy breakdown
* st…