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Hi,
is it possible to stop the snakemake workflow if an output file is empty? I've tried with the checkpoints but couldn't properly create the rules and make it work.
For example, in the followi…
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A FileNotFoundError: [Errno 2] No such file or directory: error occurs. This error appears when inputting long sequences or complex structures into the contigs. When generating proteins with simple st…
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Hello @tseemann team:
I am new to prokka. I set up prokka on our HPC cluster.
after the installation, /risapps/noarch/prokka/1.14.6 is my git clone location, run
$ /risapps/noarch/prokka/1.14…
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Hello,
Could you please let me know what FastANI does with contigs less than 500 bp? Does it remove them and start working with 3kb contigs?
Thanks!
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Sorry for the silly question. Probably there is also an easy way to find out the solution. However, I am not that experienced with computational protein design.
I want to specify that I want to in…
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graphbin2 doesn't seem to scale very well for large assemblies with large number of contigs. Given that a big fraction of the contigs generated by metaSPAdes are usually small, and there's no contig l…
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Given the following reference:
```
>seq1
CTTTCCAATGCAAAGCG
>seq2
CGTAACGTGCTCCGAAC
>seq3
GTGGAAACCCAAGCTAG
```
and the following unaligned bam file:
```
@HD VN:1.6 SO:queryname
AAANYG5M5…
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Hi,
I wanted to change the minimum percent coverage (--min-coverage) for a match in find_target_contigs, but the command is unrecognised.
The parameter is present in the documentation. I have trie…
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Hello,
I would like to use QuarTeT GapFiller to fill gaps in my Clarias macrocephalus assembly chromosomes using unplaced scaffolds. I have mapped these unplaced scaffolds to a closely related specie…
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Dear BASALT team,
Do you have any idea how to solve the issue mentioned before - **command not found #18** (https://github.com/EMBL-PKU/BASALT/issues/18)?
**Error screenshot**
**Command lin…