-
**Description of bug**
Hello,
I used PhaGNC2 to classify the my viral contigs, but an error occurred during its operation. The log file was very long and there were several errors in it as follo…
Cr7-L updated
6 months ago
-
Hello,
I'm looking at detecting fusions in the T2T genome. I tried running it using the T2T reference files, without any blacklist or known fusion files. It ran but I didn't get any results. I am …
-
Hi,
I'm trying to use MetaPhage v2 beta.
When I tried running the program with the demo data, virsorter2 seemed to be throwing an error.
Below is the excerpt of the nextflow log.
\-----
Mar…
-
Hi,
You mention that COBRA has so far only been tested on assembled contigs from metaSPAdes, IDBA_UD, and MEGAHIT. Would you recommend to use it on viral contigs that have been assembled using sing…
-
Assessment of CK6901M in assembly_qc with kraken turned on identified 62 contigs as "homo sapiens'. Random selection of 5 contigs BLASTed into NCBI returned no hit or time out for 3 and homology to Ac…
-
Hi
I've been utilizing Arriba for RNA fusion analysis. A few months ago, I managed to successfully generate output files using RNA data on my MacBook's terminal by executing the same command lines. H…
-
Hello,
I try to run the virify pipeline using slurm singularity on our cluster, but I get : annotate:checkV failed.
At first , run a small number of contigs (10contigs) using core 1 and max_cores 1 …
-
Hi,
VIGA is a highly anticipated tool.
I used `ERR843912` as a test. After completing `Step 1: Virus Identification`, I found that the generated `output_test/Ref/ERR843912.fa` file was empty, w…
-
* pharokka version: 1.3.2
* Python version: 3.10.8
* Operating System: Unix on an HPC
* Installed with conda
### Description
I've successfully used pharokka dozens of times, same version, same …
-
I have a few viruses that are in multiple contigs. Would it be possible to use your taxonomy module if I concatenate the contigs and join scaffolds with Ns?