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Hi Florian,
I'm building a `microbial_nt` database with this command: `krakenuniq-build --db microbial_nt --kmer-len 31 --threads 40 --taxids-for-genomes --taxids-for-sequences`. And I'm getting t…
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I completed the canu tutorial for the ONT data with no problems. I then tried to use my own data by running the following command:
`/home/hh/canu/Linux-amd64/bin/canu \
-p HBV -d HBV-oxford \
…
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Having issues with pplacer step - it seems everything else is working, and the check install step works just fine so I don't think it's an install issue...
I have tried giving the command different…
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Find some articles describing the found endophyte ratios.
Otherwise, go with 70-80% fungi, 20-30% bacteria. Then dilute these for the abundance of _P. zijinensis_
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**Submitting author:** @ym2877 (Yoli Meydan)
**Repository:** https://github.com/korem-lab/pymgpipe
**Branch with paper.md** (empty if default branch): joss-paper
**Version:** v0.15.0
**Editor:** @fboe…
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Thank you for the intriguing tool. I have predicted the functional annotations (amino acid sequences) of different microbial eukaryotes from the genomics data, and I would like to compare their gene f…
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I am a user of peptide shaker.
I want to find peptides after microbial fermentation.
1. I want to find peptides under 8 amino acid sequences. However, even though I change the analysis conditio…
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canu command run:
```
canu -d assembly/R5_Diff -p R5_Diff -pacbio-hifi trimmed_reads/R5_Diff.fq useGrid=false genomeSize=3000000 maxInputCoverage=20000
```
output of canu -version:
```
can…
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Hi,
I'd like to first note that I'm a nearly complete novice in metabolic modeling and systems biology
I'm interested in microbial auxotrophy, and I want to predict auxotrophies using only genom…