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That would also allow to create some unit tests
for CTD2Galaxy. Yours, Steffen
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Dear FragPipe Team,
Recently, I am fucosing on labile-mode search with FragPipe. However, I don't know how to get the matching results of fragment ions(b,y) with labile modification
Just like t…
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Dear Sami Pietilä,
Thanks for excellent software for metaproteomic DIA data! I met a problem when running glaDIAtor on Windows 10 platform from web browser. My input rawdata was one of your exampl…
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My peptide cannot be described with proforma.
Does anyone have an example script of how to annotate from a custom table of fragments in tabular format ie (name,mz)
```import matplotlib.pyplot as…
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Dear Fragpipe Team,
thanks for your amazing work!
We are currently trying to extract information at fragment ion level from FragPipe results.
Ideally, we would need a report file that provides add…
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I noticed this odd BN.1.3.5 singlet sequenced
hCoV-19/France/IDF-APHPSU_PSL-662405025479/2024|EPI_ISL_19193543|2024-05-12
BN.1.3.5 wasn't common in France, much more so in East/South East A…
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Currently, `remove_unused_fragments` is only implemented for dense libraries.
An implementation for flat libraries would be very usefull and should be easy to implement.
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Timstof .d directories are now natively supported by rust: https://github.com/lazear/sage/issues/117#issuecomment-1928514516, using timsrust to load them.
I just ran some quick tests on some test dat…
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Currently, the IdScores are modelled as a List of key-value pairs: ["score1:value1", "score2:value2"]. This is good for compatibility across different parquet implementations duckDB, Rust Parquet etc.…
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e.g. the query
```SPARQL
SELECT DISTINCT ?item ?itemLabel ?_PubMed_ID
WHERE
{
?item wdt:P31 wd:Q13442814 ;
rdfs:label ?itemLabel .
OPTIONAL { ?item wdt:P698 ?_PubMed_ID. }
FIL…