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Hi,
I'm using this command to generate metagenomes from a set of genome fasta files:
iss generate --draft (list of *.fna files) --output --model nextseq --coverage uniform -p 128 -n 50M
Alt…
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Good afternoon!
I'm sorry to bother you.
Could you please advise me what could supposedly be wrong with my results?
I saw a thread above with a similar case.
But I'm confused by the fact that my …
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Is there a way to increase the visibility of SNPs at wider views? In the example below, I can see SNP differences between alignments in a 56 kb window, but not in a 140 kb window, which encompasses th…
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Hi!
I would like to use TEtrimmer to curate consensus sequences coming from PANTERA pipeline which identifies TEs from pangenome polymorphisms. For this reason, many of the TE families identified b…
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**Datasets > Other data**
- Create a new subfolder for mappable genome
**Create new section to explain the mappable genome**
- The mappable genome was created by Claudia Arnedo in the Hotspots pr…
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I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …
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See changes in chromosome coverage between regular chromosome and contig: chrUn_JH584304:240-41460 vs chr1:191166350-191186620
olegs updated
4 months ago
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Hello,
I'm working on a trio-binned assembly (haploid but including both sex chromosomes), and am using the merqury hapmers.sh tool to get some insight on the process. The resulting plot has the e…
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Hi there, thanks for this awesome package! Fills our needs almost perfectly, and I'm excited to use it. My species of interest has a reference genome, but unfortunately it's of the heterogametic sex. …
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Hi,
I have issue similar to #388 #49 #563 , but different in one point.
Namely, I am working with diploid plant genome. I have several individuals sequenced with Pacbio hifi. When assembled with hif…