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### What type of data change are you requesting?
- [ ] new_data_value
- [X] data_correction
- [ ] set_existing_value_as_primary
### attribute label
ploidy
### Description of request
For the speci…
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Let me know where I should ask this question better please.
--- I can't see how to mimize the configureation pane on the right, even when fully collapsed it is is still there and in the way of seeing …
jpdna updated
9 years ago
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Hi SunPeng
What is the best approach when the ancestor is unknown and there is no information about ancestor of testing plant species?
Regards
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Hello,
I’ve been admiring the chromosome collinearity images produced by the ` jcvi.graphics.karyotype` module; they are indeed very beautiful. However, it seems that this module is designed prima…
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Sibelia run as:
-s loose -m 50000
on bacterial assembly, output is fine.
Running sortsqequences.py in output folder (with circos folder inside) gives:
chromosome [block_00] not in karyot…
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we need to be able to deal with complex rearrangements encoded with ISCN notation. the handbook is here:
http://onlinelibrary.wiley.com/doi/10.1002/0471142905.hga04cs17/pdf
we'll need to be able to…
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Hi, I was wondering if this is an issue that has been seen before. I am new to facets and copy number calling so I would appreciate any help/advice.
I have been running FACETS for several samples …
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Hi Bernat,
Thank you for the great tool. I would like to create the karyotype for a new rat genome mRatBN7.2/rn7 - NCBI released Nov 2020 but UCSC just recently: http://hgdownload.soe.ucsc.edu/gold…
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Hi! Could you provide the DOI of this paper "Improving Classification of Curved Chromosomes in Karyotyping using CNN-based Deformation"? Is there any preprint of it? Thanks a lot.
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One exciting feature would be to generate plots for individual cells (karyogram) from the SKY data (see below).
ftp://ftp.ncbi.nlm.nih.gov/sky-cgh/DATA/SKY-images/A_Schaeffer_Tm12_E6__E6_E7TTL__kar…