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What are empirically good values for `l` and `k` when generating a custom database which is going to be used for Oxford Nanopore data?
Anyone some hints here? Would you stick to the default? I am a…
ms-gx updated
3 months ago
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# Issue Report
## Please describe the issue:
I am working on epigenetic analysis for bacterial samples using Oxford Nanopore sequencing (FLO-MIN114), and I’m transitioning from Tombo to Dorado for…
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It looks like this set of analysis tools is set up for analyzing paired-end sequencing data. Is it also possible to analyze long read data (ONT, PacBio), which aren't in paired-end format?
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Depending on what data is available at any moment, we may need to perform analysis with only short (illumina) reads, only long (Oxford Nanopore aka ONT) reads, or a hybrid analysis using both short an…
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My problem is that I am having difficulty obtaining a list of variants using bcftools mpileup and bcftools call with PacBio data. I do not have this problem with data of Illumina paired-end sequencing…
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Search SRA
"oxford nanopore"[Platform] AND mus musculus[Organism] AND "genomic"[Source]
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Hi,
I use this excellent package as part of a workflow for analysis on .fast5 data from Oxford Nanopore.
More recent data uses vbz compression instead of gzip
(see https://github.com/nanoporetech/…
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### Oxford Nanopore
- [NA12878](https://github.com/nanopore-wgs-consortium/NA12878) WGS data
### PacBio
- PGV001 patients
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Hi,
Stupid question from rookie; Is this working for long read data, like Oxford Nanopore?
Thank you!
Peny
OxPen updated
6 years ago
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The Galaxy clair3 tool currently uses r941_prom_hac_g360+g422 model and r941_prom_sup_g5014 model.
https://github.com/galaxyproject/tools-iuc/blob/0ee665c3393af083833fdb9becbe6965d009e16c/tools/clai…