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Dear dev team,
I realize the recorded current in the bulk file is immutable during playback when performing adaptive sampling on it with Readfish. Although no actual enrichment can be achieved, I a…
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### Description of the bug
Running CellRanger with all GEX samples, in which there are multiple barcodes per sample, but the all go to the same sample (see the samples & barcodes tables below).
Thi…
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works in 8.20.6
```
# kate: syntax python;
DATASETS = '1 2 3'.split()
rule mapmature_all:
input: '{ds}.bam'.format(ds=ds) for ds in DATASETS
rule gzip:
output: '{file}.gz'
input…
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It uses `['fastq', 'fastq.gz']` for the filter but the AnVIL file formats have a leading dot, as in `['.fastq', '.fastq.gz']`.
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seem to have isolated it to this step:
minimap2 -a -t 2 -R "@RG\tID:run1\tSM:sample1\tLB:library1\tPL:ILLUMINA" refs/AF086833.fa reads/SRR1553425_1.fastq reads/SRR1553425_2.fastq | \
> samtools so…
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I'm interested in using `mity` to assess within-individual variation in mitochondrial DNA. I have assembled mitochondrial genomes for ~300 individuals of a non-model fish species using `MitoZ` and fou…
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I run the second script for Hi-C Pro after the bowtie2 alignment and the script seems to have problem processing all the files (in the "Merge chunks from the same sample" and "Generate binned matrix …
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### Description of the bug
Hi there,
Could you comment on my error on strandness below.
My sample sheet is something like this:
```
sample,fastq_1,fastq_2,strandedness
MaleKO_S1,/projects/S1.R1.fast…
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Hello, for first time I am having some problems since I started to use rampart after generate my fastq with dorado. I have this kind of problems:
(artic-rampart) minion@minion-H470M-DS3H:~/Documents/…
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Hi,
I was able to get the trinity variant calling script to run on my HPC but I think now looking into it, it only ran one of the samples when I used this script, I only see information for the sam…