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Faith, J. J.
McNulty, N. P.
Rey, F. E.
Gordon, J. I.
2011
Predicting a human gut microbiota's response to diet in gnotobiotic mice
http://dx.doi.org/10.1126/science.1206025
The interrelationships bet…
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@mslarae13 @cmungall @sierra-moxon @aclum
This issue describes a technique I can use to infer `env_package` annotations for Biosamples that don't have one, which in turn should improve the `env_lo…
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relates to https://github.com/microbiomedata/nmdc-runtime/issues/249
For some of the records the ingest code populated `instrument_name` with `Illumina Illumina HiSeq`. This is because some of the NE…
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**Paper**
- [CAMI II: identifying best practices and issues for metagenomics software](https://www.nature.com/articles/s41592-022-01419-0)
**Research Briefing**
- [Critical Assessment of Metageno…
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In order to examine the relationship between soil microbial communities and trace gas fluxes across the soil-atmosphere interface, I want to collect all co-located measurements of these two kinds. I w…
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Isee this in the latest gold conversion
```
id: "gold:Gb0119259"
name: "Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_10"
…
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The setup files `rhimgCAMI2_setup.tar.gz` and the genomes `rhimgCAMI2_genomes.tar.gz` used for the _A. thaliana_ rhizosphere mock data have been downloaded.
- `wget -P /path/ https://frl.publisso.d…
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Kindly comment on this issue why you are interested in this mini-project
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Turnbaugh, P. J.
Ridaura, V. K.
Faith, J. J.
Rey, F. E.
Knight, R.
Gordon, J. I.
2009.
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
http://dx.d…
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Many of us are interested in the activity of each MAG in our microbial community. While changes in MAG abundance among samples are interesting, they do not tell the whole story about how the communit…