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Hello!
I am trying to use Arriba on a bit of an obscure genome (the woodchuck genome) to detect virus integration from a hybrid genome generated by `cellranger mkref`. I installed Arriba via Biocon…
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Dear Developers,
I-m trying to use Shasta to reconstruct a genome of 7500bp {viral genome}.
I did a targeted sequencing using MinION, this my data are constituted by very redundant information with …
BioRB updated
4 years ago
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Hi,
Is it possible to have the original contig name in the output include the information after the space so that the name of the contig from the original contig dictionary would be captured?
>KM_…
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Hi developers,
I had a little confuse about the new version VIBRANT. It adds a table AMGs_annotations_xxx.tsv. That's really helpful. Not all the genes in this table were designated as AMGs. This…
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Dear SPAdes team,
I am trying to install metaviralSPAdes using the following commands:
```
export LDFLAGS=-lrt
dir='metaviralSPAdes'
git clone -b 'metaviral_publication' https://github.com/ab…
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Rayan posted this example output from darth:
s3://serratus-public/assemblies/other/SRR9156994.coronaspades/
This seems to be lacking fasta alignments from pfam, while other sets included them. T…
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So here's the general outline of the two approaches and the drawbacks of each for us to discuss at Friday's Assembly meeting. I think the approach will be for us to try variations, see how they perfor…
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* [CheckV](https://bitbucket.org/berkeleylab/checkv/src/master/)
* fully automated command-line pipeline for assessing the quality of metagenome-assembled viral genomes, including identification of…
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Hi,
I'm trying to install VirSorter on our HPC cluster and have encountered an issue when testing on a bacterial genome which I know has several prophages and those were detected using VS on my loc…
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Frank is missing his RdRP:
`aws s3 cp s3://serratus-public/assemblies/annotations/ERR2756788.fa.darth.stripped.tar.gz . `
`tar -zxvf ERR2756788.fa.darth.stripped.tar.gz ERR2756788.darth/pfam/al…