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Hi Winnowmap Team,
I am trying to use winnowmap to do whole-genome alignments. In some cases, winnowmap is resulting in large unaligned regions like below:
I am kind of new in the world of whole genome alignments. I wanted to create a s…
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Hi,
Is it possible to join two HAL alignments that share a common ancestor/root species?
For example, if I have a HAL file with alignments of placental mammal genomes using the platypus as an outg…
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Hi ,
We are interested in this pipeline and are attempting to use for our work . We get error belw when we run it. Any solutions you suggest ?
Finished parsing hits for 33 of 33 (100.00%) …
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Hello,
Thank you for this nice tool.
Is there a way to change the display of the tracks by using the functions assembly(), track_feature(), track_alignments(), default_session(), or at least a con…
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I noticed that the pipeline now has new mitochondrial read alignments. Do these alignments happen before the alignment to the nuclear genome, do they happen in parallel to the alignment for the nucle…
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http://genome.ucsc.edu/FAQ/FAQdownloads.html#download19 -> http://hgdownload.cse.ucsc.edu/downloads.html#human ->
http://hgdownload.cse.ucsc.edu/goldenPath/hg38/vsMm10/
Data explanation at the to…
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Hello,
and thank you for this amazing tool. I am currently examining different methods of hybrid de novo transcriptome assembly.
I constructed various assemblies from mouse data and compared their…
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Dear seqwish team,
I built a bacteria pangenome graph with wfmash+seqwish+bandage, which is from Chlamydia trachomatis species, about 50 genomes/strains with ANI> 99%, I have the attached graph out…
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Dear AnchorWave team,
I am currently working on a project that involves calculating identities of 1M window size pairwise alignments in whole genome comparisons. I understand that AnchorWave is des…