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Hi,
What preset should be used with Fluidigm C1 platform?
Thanks and good day.
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**Question**
In the Chapter `AIR REPERTOIRE`, output is `path_tcr_out = f"{path_data}/TCR_01_preprocessed.h5ad"` in [30. Immune Receptor Profiling](https://www.sc-best-practices.org/air_repert…
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Hi I'm new to T cell receptors and [Adaptive Immune Receptor Repertoire](https://www.antibodysociety.org/the-airr-community/) and I have some question (I'm not sure if they would be better in slack or…
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Steps to reproduce:
1) Add in a genotype to a subject entry. For example, in `lang/python/tests/data/good_combined_airr.json` I added a simple entry
![image](https://user-images.githubuserconte…
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Now that scirpy is part of scverse, we could think of an improved data structure for scAIRR data. See also the discussion at https://github.com/theislab/scanpy/issues/1387.
The challenge with scAI…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/snaketron/ClustIRR
Confirm the following by editi…
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In cell hashing or CITE-seq datasets, an additional count matrix is produced and it stores how many ADT/HTO barcodes (see this for details https://genomebiology.biomedcentral.com/track/pdf/10.1186/s13…
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https://mp.weixin.qq.com/s/boDawuFSHqY_LuXLyPOYsg
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Hi
Likely I have a lot of NAs in my TCR
`quantContig(combined, cloneCall="gene+nt", scale = T)`
![Rplot](https://user-images.githubusercontent.com/43682980/167117304-9496604e-b555-4bcd-98a2-87…
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https://mp.weixin.qq.com/s/qg01zt-MU9xo3bsnDHPTKg