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_From @pgaudet on November 23, 2017 12:23_
Hello,
Following up on #13004, we need to implement a rule to prevent propagation of GO:0001618 virus receptor activity annotations.
It may make sen…
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Hi! I'm trying to import the results from ghostkoala to anvio and I'm following your procedure https://merenlab.org/2018/01/17/importing-ghostkoala-annotations/ but when I arrive at this point:
pytho…
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It appears that orthologous relationships are only added to nodes present in the network at the start of Phase III. geneAbundances added to the network via "gene scaffolding" are not getting connected…
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Hello,
I have been unable to complete my ExOrthist run because of the following error:
ERROR : Unknown image format/type: /nfs/users/lserrano/lciampi/JuanRamon/Orthologies/ExOrthist/singularity…
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Is it possible to add an ability to create an orthology group with 1 gene from each species? (via selection longest or most similar to other genes in group if more than 1 gene is presented from specie…
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see http://monarchinitiative.org/gene/NCBIGene:100072706
for example,
there should be plenty of homologs as this is pitx1
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During the Technical Team call on January 30th, it was determined that we would like to host an **Outreach call to get user feedback** on the **Phenotype Node Page**. We identified that we can use an …
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As I see it now, the only thing that has to be updated is then the orthology management between networks in the same species. Right now complex (the command line tool) does not calculate conservation …
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Hi, I tried to impute my own spatial datasets (as mouse) with the tutorial for imputation. However, it seems that I cannot impute it with a bug:
```
ValueError: None of AnnData.var.index found in …