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Hi. This is a very useful tool. I'm wondering if this tool can be applied to Parse Biosciences scRNAseq technology. Are you thinking about doing a tutorial about this? Thank you very much.
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Hiya,
Can Arriba be used to detect fusions in single-cell RNAseq data (e.g. Smart-seq2). I expect to see a greater number of false positives compared to bulk RNAseq, and with a lower number of read…
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Hi,
Seurat 3 comes with a handy `FindIntegrationAnchors` and `IntegrateData` to compare differences and similarities between two scRNAseq data sets. Is it possible to create xCell object for this…
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### Description of feature
I am currently looking into using scrnaseq for a clinical trial. In our setup we have GEX, FB, and VDJ data for several patients which are hashed using Totalseq-C. Curren…
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Hi BIMSB team,
I've been working on getting your pipeline up and running as a non-root user on our group's compute cluster. Unfortunately, installing guix isn't an option in my case, but after some…
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Hi
I was wondering whether the reference data sets need to be completley overlapping in terms of identified cell types? Or is it possible to have a certain cell type only represented in one data se…
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`STAR --runThreadN 8 \
--genomeDir /Users/plab/Desktop/Fasta_scRNAseq/STAR_Genome_Indices/Intact/ \
--readFilesIn CP18S_L001_R2.fastq,CP18S_L002_R2.fastq,CP18S_L003_R2.fastq,CP18S_L004_R2.…
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Dear Developers
Could I monkey2 to identify co-regulated gene modules using scRNAseq data where each cell will act as a separate samples.
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In the `h5ad-to-arrow`, we actually have much more data than we output. We could ouptut as well:
- [x] Cluster assignments form leiden clustering
- [ ] Heatmap of cell x expression
- [ ] Interme…
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Dear developers,
Thanks for developing this great tool. Can I use this tool for processing merfish data and integrate scRNAseq data with merfish?