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Hi,
An error appears for the feature file as shown in the image I have attached. To see if it would move forward I added a ft.fofn empty file but there is no difference. Does the script require GFF…
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Version 5's conda installation supposedly reduces or even eliminates all the awkwardness with which busco is currently being run. Could be worth checking out...
cschu updated
3 years ago
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Dear Dr. Charlottewright:
Hello! When I ran the code you provided to infer the lepidoptera chromosome fusion event, an error occurred and I do not know how to solve it. The following is my code and…
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Having "`*run_*`" in the BUSCO output directory name causes an error (e.g. BUSCO5_rerun_XYZ_output)
https://github.com/jamiemcg/BUSCO_phylogenomics/blob/0589f6ce883c3ebfa3b7521339d8caaf7f8bc526/…
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Dear Haoyu
I have a species that survey and flow cytometry are 2.4G.
This is PacBio data survey.
![WechatIMG2163](https://github.com/chhylp123/hifiasm/assets/73478074/8af2f20a-878b-42bd-ba83-d8…
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Hi there,
I was wondering if there is plans to integrate compleasm as an alternative to BUSCO, since its running 10x faster. It can produce a BUSCO-formatted output table
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Hello again Dengfeng,
I am trying purge_dups on two genomes assembled by supernova. The raw assembly of the first genome is highly duplicated and purge_dups resulted in quite a big improvement of t…
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Camille,
I want to retain all contigs for which _any_ annotation data exists, including BUSCO hits. This would be easy if the BUSCO results were including in the final gff3 file in some way. What do…
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Hola buenas,
una pregunta no entiendo de donde asumimos que x e y son enteros
me hace sentido si lo analizamos del otro lado, pero como se que son necesariamente enteros si busco demostrar que d…
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Hello,Professor
I am running `trinity` with `De novo transcript assembly` without reference assembly. I have a sample with three tissues. I separately run trinity per tissue. My command is `Trinity …