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hi guys,
it is not clear to me where you have acquired the sequence of ribosomal RNA for human from ensembl.
Similarly, it is not clear to me what you mean by coding and non-coding sequences
Also I…
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I ran this program successfully, but the output PDB file does not look right. The last amino acid of the protein is connected to the first RNA base. Is there a way to fix this?
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This is the result of discussions on the two (now closed) issues:
rna-transcription -- weird non-biological thing slipped into this problem #148
and
RNA Transcription: source gives slightly differ…
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Based on this discussion: https://github.com/HGVSnomenclature/hgvs-nomenclature/discussions/49.
As the r. coordinate type refers to mature (coding) RNA molecules, descriptions using the r. coordina…
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Understand and identity the workflow of the vartable program.
Which part of the program depends on DNA-data and till where does this dependency continues.
- [ ] How to adjust vartable.py
- [ ] H…
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Hi I try to run the forgi tutorial but not seem to be able.
```
import matplotlib.pyplot as plt
import forgi.visual.mplotlib as fvm
import forgi
cg = forgi.load_rna("examples/input/1y26.fx", allo…
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```python
[mm] rna-search-with-a-new-alphabet$ python test.py
Traceback (most recent call last):
File "test.py", line 3, in
a = RNAalignment('RF01074.txt')
File "/home/magnus/work-src/rn…
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while processing the data with Tombo before using MINES, which reference fasta should be used for ONT direct RNA sequencing data - genome or cDNA fasta.
akk01 updated
3 years ago
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Hi, Dengfeng
`purge_dups` is super easy to easy tool. Thanks for developing.
I use the Falcon-Unzip to assemble a outbreed plant (270M genome size, 1.8% het ,based on GenomeScope), but the Unzip…
baozg updated
4 years ago
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Hi Tobias,
Thank you for creating the ITAG4.1 GO annotation for tomato! This is a valuable resource for the plant research community.
I am currently using your annotation to perform GO enric…