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I have run the Falco using the following commands
falco --nano reads.fastq.gz
I am using nanopore reads. Html report says it is using the sanger/illumina encoding even though I have specified the na…
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Hi,
Does the capTEs suitable for nanopore direct rna sequencing data?
Thanks,
Bai
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Hi there,
I encountered a KeyError exception when running NanoSim. Specifically, the error report KeyError: "tag 'cs' not present". This error occurred during the execution of the script when tryin…
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I was looking for an ONT raw signal dataset at very high coverage (a few 100X) and the nanopore dataset in this repository seems to be ideal. It is just a few genomic regions that I need the raw data …
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**Describe the bug**
i got some error
**Error message**
[17613 ERROR] 2024-02-14 06:28:37 ctg_align failed: please check the following logs:
[17613 ERROR] 2024-02-14 06:28:37 /var2/NGS_RAW_DATA/…
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Hi,
I am trying to use bamsnap with long read data from Nanopore aligned reads using minimap. I do not manage to get any output and the exit error is a number that I cannot debug (when I Google "Key…
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I was wondering if I could get some assistance with this. What does it mean? Am I writing the command incorrectly? Is there something additional that I need to download? I installed VirSorter using An…
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Hi! I input custom adapter using adapter.py, these adapters can be found if i use -o function for trimming
"30,139 / 32,299 reads had adapters trimmed from their end (2,444,748 bp removed)"
but …
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Is kraken suitable for taxonomic analysis of long reads (nanopore sequences) ?
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Can I use nextsv for ultra-long nanopore data?